RNAlib-2.2.0-RC2
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CbondT | Base pair |
CbondTEn | Base pair with associated energy |
CcofoldF | |
CConcEnt | |
Cconstrain | Constraints for cofolding |
CCOORDINATE | This is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE |
Ccpair | This datastructure is used as input parameter in functions of PS_dot.c |
CduplexT | |
CdupVar | |
Cfolden | |
Cinteract | |
Cintermediate_t | |
CINTERVAL | Sequence interval stack element used in subopt.c |
CLIST | |
CLST_BUCKET | |
Cmove_t | |
CPAIR | Base pair data structure used in subopt.c |
Cpair_info | A base pair info structure |
Cpairpro | |
Cpath_t | |
Cplist | This datastructure is used as input parameter in functions of PS_dot.h and others |
CPostorder_list | |
Cpu_contrib | Contributions to p_u |
Cpu_out | Collection of all free_energy of beeing unpaired values for output |
Csect | Stack of partial structures for backtracking |
CsnoopT | |
CSOLUTION | Solution element from subopt.c |
Cstruct_en | |
Csvm_model | |
CswString | |
CTree | |
CTwoDfold_vars | Variables compound for 2Dfold MFE folding |
CTwoDpfold_vars | Variables compound for 2Dfold partition function folding |
Cvrna_exp_param_t | The datastructure that contains temperature scaled Boltzmann weights of the energy parameters |
Cvrna_fold_compound | The most basic data structure required by many functions throughout the RNAlib |
Cvrna_hc_t | The hard constraints data structure |
Cvrna_helix | |
Cvrna_md_t | The data structure that contains the complete model details used throughout the calculations |
Cvrna_mx_mfe_t | Minimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound |
Cvrna_mx_pf_t | Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound |
Cvrna_param_t | The datastructure that contains temperature scaled energy parameters |
Cvrna_sc_t | The soft constraints data structure |
Cvrna_sol_TwoD_pf_t | Solution element returned from vrna_TwoD_pf_fold() |
Cvrna_sol_TwoD_t | Solution element returned from vrna_TwoD_fold() |