RNAlib-2.2.0-RC2
+ Include dependency graph for 2Dfold.h:

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Data Structures

struct  vrna_sol_TwoD_t
 Solution element returned from vrna_TwoD_fold() More...
 
struct  TwoDfold_vars
 Variables compound for 2Dfold MFE folding. More...
 

Functions

vrna_sol_TwoD_tvrna_TwoD_fold (vrna_fold_compound *vc, int distance1, int distance2)
 Compute MFE's and representative for distance partitioning. More...
 
char * vrna_TwoD_backtrack5 (vrna_fold_compound *vc, unsigned int j, int k, int l)
 Backtrack a minimum free energy structure from a 5' section of specified length. More...
 
TwoDfold_varsget_TwoDfold_variables (const char *seq, const char *structure1, const char *structure2, int circ)
 Get a structure of type TwoDfold_vars prefilled with current global settings. More...
 
void destroy_TwoDfold_variables (TwoDfold_vars *our_variables)
 Destroy a TwoDfold_vars datastructure without memory loss. More...
 
vrna_sol_TwoD_tTwoDfoldList (TwoDfold_vars *vars, int distance1, int distance2)
 Compute MFE's and representative for distance partitioning. More...
 
char * TwoDfold_backtrack_f5 (unsigned int j, int k, int l, TwoDfold_vars *vars)
 Backtrack a minimum free energy structure from a 5' section of specified length. More...