RNAlib-2.2.0-RC2

Various functions for plotting RNA secondary structures, dot-plots and other visualizations. More...

+ Include dependency graph for PS_dot.h:

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Functions

int PS_rna_plot (char *string, char *structure, char *file)
 Produce a secondary structure graph in PostScript and write it to 'filename'. More...
 
int PS_rna_plot_a (char *string, char *structure, char *file, char *pre, char *post)
 Produce a secondary structure graph in PostScript including additional annotation macros and write it to 'filename'. More...
 
int gmlRNA (char *string, char *structure, char *ssfile, char option)
 Produce a secondary structure graph in Graph Meta Language (gml) and write it to a file. More...
 
int ssv_rna_plot (char *string, char *structure, char *ssfile)
 Produce a secondary structure graph in SStructView format. More...
 
int svg_rna_plot (char *string, char *structure, char *ssfile)
 Produce a secondary structure plot in SVG format and write it to a file. More...
 
int xrna_plot (char *string, char *structure, char *ssfile)
 Produce a secondary structure plot for further editing in XRNA. More...
 
int PS_dot_plot_list (char *seq, char *filename, plist *pl, plist *mf, char *comment)
 Produce a postscript dot-plot from two pair lists. More...
 
int aliPS_color_aln (const char *structure, const char *filename, const char *seqs[], const char *names[])
 
int PS_dot_plot (char *string, char *file)
 Produce postscript dot-plot. More...
 

Detailed Description

Various functions for plotting RNA secondary structures, dot-plots and other visualizations.