RNAlib-2.2.0-RC2
+ Collaboration diagram for Stochastic Backtracking of Consensus Structures from Sequence Alignment(s):

Functions

char * vrna_ali_pbacktrack (vrna_fold_compound *vc, double *prob)
 Sample a consensus secondary structure from the Boltzmann ensemble according its probability
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char * alipbacktrack (double *prob)
 Sample a consensus secondary structure from the Boltzmann ensemble according its probability
. More...
 

Detailed Description

Function Documentation

char* vrna_ali_pbacktrack ( vrna_fold_compound vc,
double *  prob 
)

Sample a consensus secondary structure from the Boltzmann ensemble according its probability
.

See also
vrna_ali_pf_fold() for precomputing the partition function matrices, and
Parameters
vcThe vrna_fold_compound of type VRNA_VC_TYPE_ALIGNMENT with precomputed partition function matrices
probto be described (berni)
Returns
A sampled consensus secondary structure in dot-bracket notation
char* alipbacktrack ( double *  prob)

Sample a consensus secondary structure from the Boltzmann ensemble according its probability
.

Deprecated:
Use vrna_ali_pbacktrack() instead!
Parameters
probto be described (berni)
Returns
A sampled consensus secondary structure in dot-bracket notation