RNAlib-2.2.0-RC2
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Energy evaluation of hairpin loops for MFE and partition function calculations. More...
Go to the source code of this file.
Functions | |
PRIVATE int | E_Hairpin (int size, int type, int si1, int sj1, const char *string, vrna_param_t *P) |
Compute the Energy of a hairpin-loop. More... | |
PRIVATE double | exp_E_Hairpin (int u, int type, short si1, short sj1, const char *string, vrna_exp_param_t *P) |
Compute Boltzmann weight ![]() | |
PRIVATE int | vrna_eval_hp_loop (vrna_fold_compound *vc, int i, int j) |
Evaluate free energy of a hairpin loop. | |
PRIVATE int | vrna_eval_ext_hp_loop (vrna_fold_compound *vc, int i, int j) |
Evaluate free energy of an exterior hairpin loop. | |
PRIVATE int | vrna_E_hp_loop (vrna_fold_compound *vc, int i, int j) |
Evaluate the free energy of a hairpin loop and consider possible hard constraints. | |
PRIVATE int | vrna_E_ext_hp_loop (vrna_fold_compound *vc, int i, int j) |
Evaluate the free energy of an exterior hairpin loop and consider possible hard constraints. | |
PRIVATE double | vrna_exp_E_hp_loop (vrna_fold_compound *vc, int i, int j) |
High-Level function for hairpin loop energy evaluation (partition function variant) More... | |
Energy evaluation of hairpin loops for MFE and partition function calculations.