RNAlib-2.2.0-RC2
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Data Structures

struct  vrna_param_t
 The datastructure that contains temperature scaled energy parameters. More...
 
struct  vrna_exp_param_t
 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More...
 

Functions

vrna_param_tvrna_params_get (vrna_md_t *md)
 Get a data structure containing prescaled free energy parameters. More...
 
vrna_param_tvrna_params_copy (vrna_param_t *par)
 Get a copy of the provided free energy parameters. More...
 
vrna_exp_param_tvrna_exp_params_get (vrna_md_t *md)
 Get a data structure containing prescaled free energy parameters already transformed to Boltzmann factors. More...
 
vrna_exp_param_tvrna_exp_params_ali_get (unsigned int n_seq, vrna_md_t *md)
 Get a data structure containing prescaled free energy parameters already transformed to Boltzmann factors (alifold version) More...
 
vrna_exp_param_tvrna_exp_params_copy (vrna_exp_param_t *par)
 Get a copy of the provided free energy parameters (provided as Boltzmann factors) More...
 
vrna_exp_param_tget_scaled_pf_parameters (void)
 
vrna_exp_param_tget_boltzmann_factors (double temperature, double betaScale, vrna_md_t md, double pf_scale)
 Get precomputed Boltzmann factors of the loop type dependent energy contributions with independent thermodynamic temperature. More...
 
vrna_exp_param_tget_boltzmann_factor_copy (vrna_exp_param_t *parameters)
 Get a copy of already precomputed Boltzmann factors. More...
 
vrna_exp_param_tget_scaled_alipf_parameters (unsigned int n_seq)
 Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) More...
 
vrna_exp_param_tget_boltzmann_factors_ali (unsigned int n_seq, double temperature, double betaScale, vrna_md_t md, double pf_scale)
 Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) with independent thermodynamic temperature. More...
 
vrna_param_tscale_parameters (void)
 Get precomputed energy contributions for all the known loop types. More...
 
vrna_param_tget_scaled_parameters (double temperature, vrna_md_t md)
 Get precomputed energy contributions for all the known loop types. More...