RNAlib-2.2.0-RC3
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Go to the source code of this file.
Data Structures | |
struct | vrna_param_t |
The datastructure that contains temperature scaled energy parameters. More... | |
struct | vrna_exp_param_t |
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More... | |
Functions | |
vrna_param_t * | vrna_params_get (vrna_md_t *md) |
Get a data structure containing prescaled free energy parameters. More... | |
vrna_param_t * | vrna_params_copy (vrna_param_t *par) |
Get a copy of the provided free energy parameters. More... | |
vrna_exp_param_t * | vrna_exp_params_get (vrna_md_t *md) |
Get a data structure containing prescaled free energy parameters already transformed to Boltzmann factors. More... | |
vrna_exp_param_t * | vrna_exp_params_ali_get (unsigned int n_seq, vrna_md_t *md) |
Get a data structure containing prescaled free energy parameters already transformed to Boltzmann factors (alifold version) More... | |
vrna_exp_param_t * | vrna_exp_params_copy (vrna_exp_param_t *par) |
Get a copy of the provided free energy parameters (provided as Boltzmann factors) More... | |
vrna_exp_param_t * | get_scaled_pf_parameters (void) |
vrna_exp_param_t * | get_boltzmann_factors (double temperature, double betaScale, vrna_md_t md, double pf_scale) |
Get precomputed Boltzmann factors of the loop type dependent energy contributions with independent thermodynamic temperature. More... | |
vrna_exp_param_t * | get_boltzmann_factor_copy (vrna_exp_param_t *parameters) |
Get a copy of already precomputed Boltzmann factors. More... | |
vrna_exp_param_t * | get_scaled_alipf_parameters (unsigned int n_seq) |
Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) More... | |
vrna_exp_param_t * | get_boltzmann_factors_ali (unsigned int n_seq, double temperature, double betaScale, vrna_md_t md, double pf_scale) |
Get precomputed Boltzmann factors of the loop type dependent energy contributions (alifold variant) with independent thermodynamic temperature. More... | |
vrna_param_t * | scale_parameters (void) |
Get precomputed energy contributions for all the known loop types. More... | |
vrna_param_t * | get_scaled_parameters (double temperature, vrna_md_t md) |
Get precomputed energy contributions for all the known loop types. More... | |