RNAlib-2.2.0-RC3
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Functions | |
SOLUTION * | zukersubopt (const char *string) |
Compute Zuker type suboptimal structures. More... | |
SOLUTION * | zukersubopt_par (const char *string, vrna_param_t *parameters) |
Compute Zuker type suboptimal structures. More... | |
SOLUTION * | vrna_zukersubopt (vrna_fold_compound *vc) |
Compute Zuker type suboptimal structures. More... | |
SOLUTION* zukersubopt | ( | const char * | string | ) |
Compute Zuker type suboptimal structures.
Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.
string | RNA sequence |
SOLUTION* zukersubopt_par | ( | const char * | string, |
vrna_param_t * | parameters | ||
) |
Compute Zuker type suboptimal structures.
SOLUTION* vrna_zukersubopt | ( | vrna_fold_compound * | vc | ) |
Compute Zuker type suboptimal structures.
Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.
vc | fold compound |