RNAlib-2.2.0-RC3
Data Structures
Here are the data structures with brief descriptions:
 CbondTBase pair
 CbondTEnBase pair with associated energy
 CcofoldF
 CConcEnt
 CconstrainConstraints for cofolding
 CCOORDINATEThis is a workarround for the SWIG Perl Wrapper RNA plot function that returns an array of type COORDINATE
 CcpairThis datastructure is used as input parameter in functions of PS_dot.c
 CduplexT
 CdupVar
 Cfolden
 Cinteract
 Cintermediate_t
 CINTERVALSequence interval stack element used in subopt.c
 CLIST
 CLST_BUCKET
 Cmove_t
 CPAIRBase pair data structure used in subopt.c
 Cpair_infoA base pair info structure
 Cpairpro
 Cpath_t
 CplistThis datastructure is used as input parameter in functions of PS_dot.h and others
 CPostorder_list
 Cpu_contribContributions to p_u
 Cpu_outCollection of all free_energy of beeing unpaired values for output
 CsectStack of partial structures for backtracking
 CsnoopT
 CSOLUTIONSolution element from subopt.c
 Cstruct_en
 Csvm_model
 CswString
 CTree
 CTwoDfold_varsVariables compound for 2Dfold MFE folding
 CTwoDpfold_varsVariables compound for 2Dfold partition function folding
 Cvrna_exp_param_tThe datastructure that contains temperature scaled Boltzmann weights of the energy parameters
 Cvrna_fold_compoundThe most basic data structure required by many functions throughout the RNAlib
 Cvrna_hc_tThe hard constraints data structure
 Cvrna_helix
 Cvrna_md_tThe data structure that contains the complete model details used throughout the calculations
 Cvrna_mx_mfe_tMinimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound
 Cvrna_mx_pf_tPartition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound
 Cvrna_param_tThe datastructure that contains temperature scaled energy parameters
 Cvrna_sc_tThe soft constraints data structure
 Cvrna_sol_TwoD_pf_tSolution element returned from vrna_TwoD_pf_fold()
 Cvrna_sol_TwoD_tSolution element returned from vrna_TwoD_fold()