RNAlib-2.2.0-RC3

Variables compound for 2Dfold MFE folding. More...

+ Collaboration diagram for TwoDfold_vars:

Data Fields

struct vrna_param_tP
 Precomputed energy parameters and model details.
 
int do_backtrack
 Flag whether to do backtracing of the structure(s) or not.
 
char * ptype
 Precomputed array of pair types.
 
char * sequence
 The input sequence.
 
short * S1
 The input sequences in numeric form.
 
unsigned int maxD1
 Maximum allowed base pair distance to first reference.
 
unsigned int maxD2
 Maximum allowed base pair distance to second reference.
 
unsigned int * mm1
 Maximum matching matrix, reference struct 1 disallowed.
 
unsigned int * mm2
 Maximum matching matrix, reference struct 2 disallowed.
 
int * my_iindx
 Index for moving in quadratic distancy dimensions.
 
unsigned int * referenceBPs1
 Matrix containing number of basepairs of reference structure1 in interval [i,j].
 
unsigned int * referenceBPs2
 Matrix containing number of basepairs of reference structure2 in interval [i,j].
 
unsigned int * bpdist
 Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j].
 

Detailed Description

Variables compound for 2Dfold MFE folding.

Deprecated:
This data structure will be removed from the library soon! Use vrna_fold_compound and the corresponding functions vrna_get_fold_compound_2D(), vrna_TwoD_fold(), and vrna_free_fold_compound() instead!

The documentation for this struct was generated from the following file: