RNAlib-2.2.0-RC3
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Functions dealing with file formats for RNA sequences, structures, and alignments. More...
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Functions | |
void | vrna_structure_print_hx (const char *seq, const char *db, float energy, FILE *file) |
Print a secondary structure as helix list. More... | |
void | vrna_structure_print_ct (const char *seq, const char *db, float energy, const char *identifier, FILE *file) |
Print a secondary structure as connect table. More... | |
void | vrna_structure_print_bpseq (const char *seq, const char *db, FILE *file) |
Print a secondary structure in bpseq format. More... | |
unsigned int | vrna_read_fasta_record (char **header, char **sequence, char ***rest, FILE *file, unsigned int options) |
Get a (fasta) data set from a file or stdin. More... | |
void | vrna_extract_record_rest_constraint (char **cstruc, const char **lines, unsigned int option) |
Extract a hard constraint encoded as pseudo dot-bracket string. More... | |
int | vrna_read_SHAPE_file (const char *file_name, int length, double default_value, char *sequence, double *values) |
Read data from a given SHAPE reactivity input file. More... | |
plist * | vrna_read_constraints_file (const char *filename, unsigned int length, unsigned int options) |
Read constraints from an input file. More... | |
unsigned int | read_record (char **header, char **sequence, char ***rest, unsigned int options) |
Get a data record from stdin. More... | |
Functions dealing with file formats for RNA sequences, structures, and alignments.