RNAlib-2.2.0-RC3

Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound. More...

Data Fields

Common fields for DP matrices
vrna_mx_t type
 
unsigned int length
 
Default PF matrices
Note
These data fields are available if
double * q
 
double * qb
 
double * qm
 
double * qm1
 
double * probs
 
double * q1k
 
double * qln
 
double * G
 
double qo
 
double * qm2
 
double qho
 
double qio
 
double qmo
 
double * scale
 
double * expMLbase
 
Distance Class DP matrices
Note
These data fields are available if
double *** Q
 
int ** l_min_Q
 
int ** l_max_Q
 
int * k_min_Q
 
int * k_max_Q
 
double *** Q_B
 
int ** l_min_Q_B
 
int ** l_max_Q_B
 
int * k_min_Q_B
 
int * k_max_Q_B
 
double *** Q_M
 
int ** l_min_Q_M
 
int ** l_max_Q_M
 
int * k_min_Q_M
 
int * k_max_Q_M
 
double *** Q_M1
 
int ** l_min_Q_M1
 
int ** l_max_Q_M1
 
int * k_min_Q_M1
 
int * k_max_Q_M1
 
double *** Q_M2
 
int ** l_min_Q_M2
 
int ** l_max_Q_M2
 
int * k_min_Q_M2
 
int * k_max_Q_M2
 
double ** Q_c
 
int * l_min_Q_c
 
int * l_max_Q_c
 
int k_min_Q_c
 
int k_max_Q_c
 
double ** Q_cH
 
int * l_min_Q_cH
 
int * l_max_Q_cH
 
int k_min_Q_cH
 
int k_max_Q_cH
 
double ** Q_cI
 
int * l_min_Q_cI
 
int * l_max_Q_cI
 
int k_min_Q_cI
 
int k_max_Q_cI
 
double ** Q_cM
 
int * l_min_Q_cM
 
int * l_max_Q_cM
 
int k_min_Q_cM
 
int k_max_Q_cM
 
double * Q_rem
 
double * Q_B_rem
 
double * Q_M_rem
 
double * Q_M1_rem
 
double * Q_M2_rem
 
double Q_c_rem
 
double Q_cH_rem
 
double Q_cI_rem
 
double Q_cM_rem
 

Detailed Description

Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound.


The documentation for this struct was generated from the following file: