RNAlib-2.2.0-RC3
interior_loops.h File Reference

Energy evaluation of interior loops for MFE and partition function calculations. More...

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Functions

PRIVATE int E_IntLoop (int n1, int n2, int type, int type_2, int si1, int sj1, int sp1, int sq1, vrna_param_t *P)
 
PRIVATE double exp_E_IntLoop (int u1, int u2, int type, int type2, short si1, short sj1, short sp1, short sq1, vrna_exp_param_t *P)
 
PRIVATE int E_stack (int i, int j, vrna_fold_compound *vc)
 Evaluate energy of a base pair stack closed by (i,j)
 
PRIVATE int vrna_BT_stack (vrna_fold_compound *vc, int *i, int *j, int *en, bondT *bp_stack, int *stack_count)
 Backtrack a stacked pair closed by $ (i,j) $.
 
PRIVATE int vrna_BT_int_loop (vrna_fold_compound *vc, int *i, int *j, int en, bondT *bp_stack, int *stack_count)
 Backtrack an interior loop closed by $ (i,j) $.
 

Detailed Description

Energy evaluation of interior loops for MFE and partition function calculations.