RNAlib-2.2.0-RC3
profiledist.h
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1 #ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2 #define VIENNA_RNA_PACKAGE_PROFILEDIST_H
3 
4 #ifdef __GNUC__
5 #define DEPRECATED(func) func __attribute__ ((deprecated))
6 #else
7 #define DEPRECATED(func) func
8 #endif
9 
11 
20 float profile_edit_distance(const float *T1,
21  const float *T2);
22 
33 float *Make_bp_profile_bppm(FLT_OR_DBL *bppm,
34  int length);
35 
39 void print_bppm(const float *T);
40 
46 void free_profile(float *T);
47 
56 DEPRECATED(float *Make_bp_profile(int length));
57 
58 #endif
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .
void free_profile(float *T)
free space allocated in Make_bp_profile
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired, upstream paired and downstream paired.
float * Make_bp_profile(int length)
void print_bppm(const float *T)
print string representation of probability profile