RNAlib-2.2.0-RC3
|
Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound. More...
Data Fields | |
Common fields for DP matrices | |
vrna_mx_t | type |
unsigned int | length |
Default PF matrices | |
| |
double * | q |
double * | qb |
double * | qm |
double * | qm1 |
double * | probs |
double * | q1k |
double * | qln |
double * | G |
double | qo |
double * | qm2 |
double | qho |
double | qio |
double | qmo |
double * | scale |
double * | expMLbase |
Distance Class DP matrices | |
| |
double *** | Q |
int ** | l_min_Q |
int ** | l_max_Q |
int * | k_min_Q |
int * | k_max_Q |
double *** | Q_B |
int ** | l_min_Q_B |
int ** | l_max_Q_B |
int * | k_min_Q_B |
int * | k_max_Q_B |
double *** | Q_M |
int ** | l_min_Q_M |
int ** | l_max_Q_M |
int * | k_min_Q_M |
int * | k_max_Q_M |
double *** | Q_M1 |
int ** | l_min_Q_M1 |
int ** | l_max_Q_M1 |
int * | k_min_Q_M1 |
int * | k_max_Q_M1 |
double *** | Q_M2 |
int ** | l_min_Q_M2 |
int ** | l_max_Q_M2 |
int * | k_min_Q_M2 |
int * | k_max_Q_M2 |
double ** | Q_c |
int * | l_min_Q_c |
int * | l_max_Q_c |
int | k_min_Q_c |
int | k_max_Q_c |
double ** | Q_cH |
int * | l_min_Q_cH |
int * | l_max_Q_cH |
int | k_min_Q_cH |
int | k_max_Q_cH |
double ** | Q_cI |
int * | l_min_Q_cI |
int * | l_max_Q_cI |
int | k_min_Q_cI |
int | k_max_Q_cI |
double ** | Q_cM |
int * | l_min_Q_cM |
int * | l_max_Q_cM |
int | k_min_Q_cM |
int | k_max_Q_cM |
double * | Q_rem |
double * | Q_B_rem |
double * | Q_M_rem |
double * | Q_M1_rem |
double * | Q_M2_rem |
double | Q_c_rem |
double | Q_cH_rem |
double | Q_cI_rem |
double | Q_cM_rem |
Partition function (PF) Dynamic Programming (DP) matrices data structure required within the vrna_fold_compound.