1 #ifndef VIENNA_RNA_PACKAGE_PS_DOT_H
2 #define VIENNA_RNA_PACKAGE_PS_DOT_H
8 #define DEPRECATED(func) func __attribute__ ((deprecated))
10 #define DEPRECATED(func) func
24 int PS_rna_plot_snoop_a(
char *
string,
70 int PS_rna_plot_a_gquad(
char *
string,
131 int PS_color_dot_plot(
char *
string,
135 int PS_color_dot_plot_turn(
char *seq,
165 int vrna_plot_dp_PS_list(
char *seq,
172 int PS_dot_plot_turn(
char *seq,
177 int PS_color_aln(
const char *structure,
178 const char *filename,
180 const char *names[]);
186 const char *filename,
188 const char *names[]);
int ssv_rna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure graph in SStructView format.
Secondary structure plot layout algorithms.
int PS_dot_plot(char *string, char *file)
Produce postscript dot-plot.
int aliPS_color_aln(const char *structure, const char *filename, const char *seqs[], const char *names[])
int PS_rna_plot(char *string, char *structure, char *file)
Produce a secondary structure graph in PostScript and write it to 'filename'.
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:45
int svg_rna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure plot in SVG format and write it to a file.
int PS_rna_plot_a(char *string, char *structure, char *file, char *pre, char *post)
Produce a secondary structure graph in PostScript including additional annotation macros and write it...
int gmlRNA(char *string, char *structure, char *ssfile, char option)
Produce a secondary structure graph in Graph Meta Language (gml) and write it to a file...
this datastructure is used as input parameter in functions of PS_dot.c
Definition: data_structures.h:55
int PS_dot_plot_list(char *seq, char *filename, plist *pl, plist *mf, char *comment)
Produce a postscript dot-plot from two pair lists.
int xrna_plot(char *string, char *structure, char *ssfile)
Produce a secondary structure plot for further editing in XRNA.