RNAlib-2.0.4
H/convert_epars.h
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00001 #ifndef __VIENNA_RNA_PACKAGE_CONVERT_EPARS_H__
00002 #define __VIENNA_RNA_PACKAGE_CONVERT_EPARS_H__
00003 
00010 #define VRNA_CONVERT_OUTPUT_ALL           1U
00011 
00012 #define VRNA_CONVERT_OUTPUT_HP            2U
00013 
00014 #define VRNA_CONVERT_OUTPUT_STACK         4U
00015 
00016 #define VRNA_CONVERT_OUTPUT_MM_HP         8U
00017 
00018 #define VRNA_CONVERT_OUTPUT_MM_INT        16U
00019 
00020 #define VRNA_CONVERT_OUTPUT_MM_INT_1N     32U
00021 
00022 #define VRNA_CONVERT_OUTPUT_MM_INT_23     64U
00023 
00024 #define VRNA_CONVERT_OUTPUT_MM_MULTI      128U
00025 
00026 #define VRNA_CONVERT_OUTPUT_MM_EXT        256U
00027 
00028 #define VRNA_CONVERT_OUTPUT_DANGLE5       512U
00029 
00030 #define VRNA_CONVERT_OUTPUT_DANGLE3       1024U
00031 
00032 #define VRNA_CONVERT_OUTPUT_INT_11        2048U
00033 
00034 #define VRNA_CONVERT_OUTPUT_INT_21        4096U
00035 
00036 #define VRNA_CONVERT_OUTPUT_INT_22        8192U
00037 
00038 #define VRNA_CONVERT_OUTPUT_BULGE         16384U
00039 
00040 #define VRNA_CONVERT_OUTPUT_INT           32768U
00041 
00042 #define VRNA_CONVERT_OUTPUT_ML            65536U
00043 
00044 #define VRNA_CONVERT_OUTPUT_MISC          131072U
00045 
00046 #define VRNA_CONVERT_OUTPUT_SPECIAL_HP    262144U
00047 
00048 #define VRNA_CONVERT_OUTPUT_VANILLA       524288U
00049 
00050 #define VRNA_CONVERT_OUTPUT_NINIO         1048576U
00051 
00052 #define VRNA_CONVERT_OUTPUT_DUMP          2097152U
00053 
00076 void convert_parameter_file(const char *iname,
00077                             const char *oname,
00078                             unsigned int options);
00079 
00080 #endif