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RNAplot - Draw RNA Secondary Structures
RNAplot [-t 0|1]
[-o ps|gml|xrna|svg] [--pre string] [--post
RNAplot reads RNA sequences and structures from stdin in the
format as produced by RNAfold and produces drawings of the
secondary structure graph. The coordinates are produced using
either E. Bruccoleri's naview routines, or a simple radial layout
If the sequence was preceded by a line of the form
the output file will be named "name_ss.ps" otherwise "rna.ps" is
used. Existing files of the same name will be overwritten.
- -t 0|1
- Choose the layout algorithm. Simple radial layout if 0, or
naview if 1. Default is 1.
- -o ps|gml|xrna|svg
- Specify output format. Available formats are: PostScript (ps),
Graph Meta Language (gml), Scalable Vector Graphics (svg), and XRNA
save file (xrna). Output filenames will end in ".ps" ".gml" ".svg"
".ss", respectively. Default is ps.
- --pre string --post string
- Add annotation macros to postscript file, and add the
postscript code in "string" just before (--pre) or after (--post)
the code to draw the structure. This is an easy way to add
annotation, e.g to mark position 15 with circle use --post "15
This man page documents version 1.8.5 Vienna RNA Package.
Ivo L Hofacker
Send comments and bug reports to <email@example.com>
This document was created by man2html,
using the manual pages.
Time: 07:19:16 GMT, February 23, 2011