RNAlib-2.2.0RC0
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This section covers all functions and variables related to the problem of incorporating secondary structure constraints into the folding recursions. More...
Modules | |
Hard Constraints | |
Soft Constraints | |
Macros | |
#define | VRNA_DECOMP_PAIR_HP 1 |
Generalized constraint folding flag indicating hairpin loop decomposition step. | |
#define | VRNA_DECOMP_PAIR_IL 2 |
Generalized constraint folding flag indicating interior loop decomposition step. | |
This section covers all functions and variables related to the problem of incorporating secondary structure constraints into the folding recursions.
Secondary Structure constraints can further be subdivided into so called Hard-Constraints and Soft-Constraints. Hard-Constraints directly influence the production rules used in the folding recursions by allowing, disallowing or enforcing certain decomposition steps. Soft-constraints on the other hand are used to change position specific contributions in the recursions by adding a bonus/penalty to certain loop configurations.