Functions and variables related to energy evaluation of sequence/structure pairs.
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float | vrna_eval_structure (const char *string, const char *structure, paramT *P) |
| Calculate the free energy of an already folded RNA. More...
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float | vrna_eval_structure_verbose (const char *string, const char *structure, paramT *P, FILE *file) |
| Calculate the free energy of an already folded RNA and print contributions per loop. More...
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int | vrna_eval_structure_pt (const char *string, const short *pt, paramT *P) |
| Calculate the free energy of an already folded RNA. More...
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int | vrna_eval_structure_pt_verbose (const char *string, const short *pt, paramT *P, FILE *file) |
| Calculate the free energy of an already folded RNA. More...
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int | vrna_eval_loop_pt (const short *pt, const short *s, const short *s1, int i, paramT *P) |
| Calculate energy of a loop. More...
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float | vrna_eval_move (const char *string, const char *structure, int m1, int m2, paramT *P) |
| Calculate energy of a move (closing or opening of a base pair) More...
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int | vrna_eval_move_pt (short *pt, const short *s, const short *s1, int m1, int m2, paramT *P) |
| Calculate energy of a move (closing or opening of a base pair) More...
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float | energy_of_structure (const char *string, const char *structure, int verbosity_level) |
| Calculate the free energy of an already folded RNA using global model detail settings. More...
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float | energy_of_struct_par (const char *string, const char *structure, paramT *parameters, int verbosity_level) |
| Calculate the free energy of an already folded RNA. More...
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float | energy_of_circ_structure (const char *string, const char *structure, int verbosity_level) |
| Calculate the free energy of an already folded circular RNA. More...
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float | energy_of_circ_struct_par (const char *string, const char *structure, paramT *parameters, int verbosity_level) |
| Calculate the free energy of an already folded circular RNA. More...
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int | energy_of_structure_pt (const char *string, short *ptable, short *s, short *s1, int verbosity_level) |
| Calculate the free energy of an already folded RNA. More...
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int | energy_of_struct_pt_par (const char *string, short *ptable, short *s, short *s1, paramT *parameters, int verbosity_level) |
| Calculate the free energy of an already folded RNA. More...
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float | energy_of_move (const char *string, const char *structure, int m1, int m2) |
| Calculate energy of a move (closing or opening of a base pair) More...
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int | energy_of_move_pt (short *pt, short *s, short *s1, int m1, int m2) |
| Calculate energy of a move (closing or opening of a base pair) More...
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int | loop_energy (short *ptable, short *s, short *s1, int i) |
| Calculate energy of a loop. More...
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float | energy_of_struct (const char *string, const char *structure) |
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int | energy_of_struct_pt (const char *string, short *ptable, short *s, short *s1) |
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float | energy_of_circ_struct (const char *string, const char *structure) |
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Functions and variables related to energy evaluation of sequence/structure pairs.