RNAlib-2.2.0RC0
vrna_fold_compound Struct Reference
+ Collaboration diagram for vrna_fold_compound:

Data Fields

unsigned int type
 The type of the fold_compound.
 
int cutpoint
 The position of the (cofold) cutpoint within the provided sequence. If there is no cutpoint, this field will be set to -1.
 
char * ptype
 Pair type array. More...
 
char * ptype_pf_compat
 ptype array indexed via iindx More...
 

Field Documentation

char* vrna_fold_compound::ptype

Pair type array.

Contains the numerical encoding of the pair type for each pair (i,j) used in MFE, Partition function and Evaluation computations.

Note
This array is always indexed via jindx, in contrast to previously different indexing between mfe and pf variants!
See also
get_indx(), vrna_get_ptypes()
char* vrna_fold_compound::ptype_pf_compat

ptype array indexed via iindx

Deprecated:
This attribute will vanish in the future! It's meant for backward compatibility only!

The documentation for this struct was generated from the following file: