RNAlib-2.2.0RC0
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All datastructures and typedefs shared among the Vienna RNA Package can be found here. More...
Go to the source code of this file.
Data Structures | |
struct | plist |
this datastructure is used as input parameter in functions of PS_dot.h and others More... | |
struct | cpair |
this datastructure is used as input parameter in functions of PS_dot.c More... | |
struct | sect |
Stack of partial structures for backtracking. More... | |
struct | bondT |
Base pair. More... | |
struct | bondTEn |
Base pair with associated energy. More... | |
struct | mfe_matricesT |
struct | pf_matricesT |
struct | paramT |
The datastructure that contains temperature scaled energy parameters. More... | |
struct | pf_paramT |
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More... | |
struct | hard_constraintT |
The hard constraints data structure. More... | |
struct | soft_constraintT |
The soft constraints data structure. More... | |
struct | vrna_fold_compound |
struct | PAIR |
Base pair data structure used in subopt.c. More... | |
struct | INTERVAL |
Sequence interval stack element used in subopt.c. More... | |
struct | SOLUTION |
Solution element from subopt.c. More... | |
struct | cofoldF |
struct | ConcEnt |
struct | pairpro |
struct | pair_info |
A base pair info structure. More... | |
struct | move_t |
struct | intermediate_t |
struct | path_t |
struct | pu_contrib |
contributions to p_u More... | |
struct | interact |
struct | pu_out |
Collection of all free_energy of beeing unpaired values for output. More... | |
struct | constrain |
constraints for cofolding More... | |
struct | duplexT |
struct | folden |
struct | snoopT |
struct | dupVar |
struct | TwoDfold_solution |
Solution element returned from TwoDfoldList. More... | |
struct | TwoDfold_vars |
Variables compound for 2Dfold MFE folding. More... | |
struct | TwoDpfold_solution |
Solution element returned from TwoDpfoldList. More... | |
struct | TwoDpfold_vars |
Variables compound for 2Dfold partition function folding. More... | |
Macros | |
#define | MAXDOS 1000 |
Maximum density of states discretization for subopt. | |
#define | VRNA_VC_TYPE_SINGLE 1 |
fold_compound_type Single Sequence | |
#define | VRNA_VC_TYPE_ALIGNMENT 2 |
fold_compound_type Sequence Alignment | |
All datastructures and typedefs shared among the Vienna RNA Package can be found here.