RNAlib-2.2.0RC0
data_structures.h File Reference

All datastructures and typedefs shared among the Vienna RNA Package can be found here. More...

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Data Structures

struct  plist
 this datastructure is used as input parameter in functions of PS_dot.h and others More...
 
struct  cpair
 this datastructure is used as input parameter in functions of PS_dot.c More...
 
struct  sect
 Stack of partial structures for backtracking. More...
 
struct  bondT
 Base pair. More...
 
struct  bondTEn
 Base pair with associated energy. More...
 
struct  mfe_matricesT
 
struct  pf_matricesT
 
struct  paramT
 The datastructure that contains temperature scaled energy parameters. More...
 
struct  pf_paramT
 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. More...
 
struct  hard_constraintT
 The hard constraints data structure. More...
 
struct  soft_constraintT
 The soft constraints data structure. More...
 
struct  vrna_fold_compound
 
struct  PAIR
 Base pair data structure used in subopt.c. More...
 
struct  INTERVAL
 Sequence interval stack element used in subopt.c. More...
 
struct  SOLUTION
 Solution element from subopt.c. More...
 
struct  cofoldF
 
struct  ConcEnt
 
struct  pairpro
 
struct  pair_info
 A base pair info structure. More...
 
struct  move_t
 
struct  intermediate_t
 
struct  path_t
 
struct  pu_contrib
 contributions to p_u More...
 
struct  interact
 
struct  pu_out
 Collection of all free_energy of beeing unpaired values for output. More...
 
struct  constrain
 constraints for cofolding More...
 
struct  duplexT
 
struct  folden
 
struct  snoopT
 
struct  dupVar
 
struct  TwoDfold_solution
 Solution element returned from TwoDfoldList. More...
 
struct  TwoDfold_vars
 Variables compound for 2Dfold MFE folding. More...
 
struct  TwoDpfold_solution
 Solution element returned from TwoDpfoldList. More...
 
struct  TwoDpfold_vars
 Variables compound for 2Dfold partition function folding. More...
 

Macros

#define MAXDOS   1000
 Maximum density of states discretization for subopt.
 
#define VRNA_VC_TYPE_SINGLE   1
 fold_compound_type Single Sequence
 
#define VRNA_VC_TYPE_ALIGNMENT   2
 fold_compound_type Sequence Alignment
 

Detailed Description

All datastructures and typedefs shared among the Vienna RNA Package can be found here.