RNAlib-2.2.0RC0
Suboptimal structures according to Zuker et al. 1989
+ Collaboration diagram for Suboptimal structures according to Zuker et al. 1989:

Functions

SOLUTIONzukersubopt (const char *string)
 Compute Zuker type suboptimal structures. More...
 
SOLUTIONzukersubopt_par (const char *string, paramT *parameters)
 Compute Zuker type suboptimal structures. More...
 
SOLUTIONvrna_zukersubopt (vrna_fold_compound *vc)
 Compute Zuker type suboptimal structures. More...
 

Detailed Description

Function Documentation

SOLUTION* zukersubopt ( const char *  string)

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

Deprecated:
use vrna_zukersubopt() instead
Parameters
stringRNA sequence
Returns
List of zuker suboptimal structures
SOLUTION* zukersubopt_par ( const char *  string,
paramT parameters 
)

Compute Zuker type suboptimal structures.

Deprecated:
use vrna_zukersubopt() instead
SOLUTION* vrna_zukersubopt ( vrna_fold_compound vc)

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

Parameters
vcfold compound
Returns
List of zuker suboptimal structures