2 #ifndef VIENNA_RNA_PACKAGE_SNOFOLD_H 3 #define VIENNA_RNA_PACKAGE_SNOFOLD_H 12 int snofold(
const char *sequence,
19 const int max_half_stem);
26 void snofree_arrays(
const int length);
29 void snoinitialize_fold(
int length);
32 void snoupdate_fold_params(
void);
35 int snoloop_energy(
short *ptable,
41 void snoexport_fold_arrays(
int **indx_p,
48 char *snobacktrack_fold_from_pair(
const char *sequence,
54 float alisnofold(
const char **strings,
60 const int max_half_stem);
63 void alisnofree_arrays(
const int length);
66 char *alisnobacktrack_fold_from_pair(
const char **sequence,
double cv_fact
This variable controls the weight of the covariance term in the energy function of alignment folding ...
Data structure for RNAsnoop (fold energy list)
Definition: basic.h:239
Various data structures and pre-processor macros.
double nc_fact
This variable controls the magnitude of the penalty for non-compatible sequences in the covariance te...