RNAlib-2.4.11
utils.h
Go to the documentation of this file.
1 #ifndef VIENNA_RNA_PACKAGE_PLOT_UTILS_H
2 #define VIENNA_RNA_PACKAGE_PLOT_UTILS_H
3 
28 char **
29 vrna_annotate_covar_struct(const char **alignment,
30  const char *structure,
31  vrna_md_t *md);
32 
33 
39 vrna_annotate_covar_pairs(const char **alignment,
40  vrna_ep_t *pl,
41  vrna_ep_t *mfel,
42  double threshold,
43  vrna_md_t *md);
44 
45 
50 #endif
vrna_cpair_t * vrna_annotate_covar_pairs(const char **alignment, vrna_ep_t *pl, vrna_ep_t *mfel, double threshold, vrna_md_t *md)
Produce covariance annotation for an alignment given a set of base pairs.
this datastructure is used as input parameter in functions of PS_dot.c
Definition: basic.h:112
The data structure that contains the complete model details used throughout the calculations.
Definition: model.h:177
char ** vrna_annotate_covar_struct(const char **alignment, const char *structure, vrna_md_t *md)
Produce covariance annotation for an alignment given a secondary structure.
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structures.h:358