1 #ifndef VIENNA_RNA_PACKAGE_EQUILIBRIUM_PROBS_H 2 #define VIENNA_RNA_PACKAGE_EQUILIBRIUM_PROBS_H 87 const char *structure);
161 const char *structure);
double vrna_mean_bp_distance(vrna_fold_compound_t *vc)
Get the mean base pair distance in the thermodynamic ensemble.
double vrna_pr_structure(vrna_fold_compound_t *fc, const char *structure)
Compute the equilibrium probability of a particular secondary structure.
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: basic.h:43
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:132
void vrna_pf_dimer_probs(double FAB, double FA, double FB, vrna_ep_t *prAB, const vrna_ep_t *prA, const vrna_ep_t *prB, int Alength, const vrna_exp_param_t *exp_params)
Compute Boltzmann probabilities of dimerization without homodimers.
double vrna_mean_bp_distance_pr(int length, FLT_OR_DBL *pr)
Get the mean base pair distance in the thermodynamic ensemble from a probability matrix.
Various data structures and pre-processor macros.
The data structure that contains temperature scaled Boltzmann weights of the energy parameters...
Definition: basic.h:102
vrna_ep_t * vrna_stack_prob(vrna_fold_compound_t *vc, double cutoff)
Compute stacking probabilities.
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.
Functions to deal with sets of energy parameters.
double vrna_ensemble_defect(vrna_fold_compound_t *fc, const char *structure)
Compute the Ensemble Defect for a given target structure.
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structures.h:358