RNAlib-2.4.11
boltzmann_sampling.h File Reference

Boltzmann Sampling of secondary structures from the ensemble. More...

+ Include dependency graph for boltzmann_sampling.h:
+ This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Functions

char * vrna_pbacktrack5 (vrna_fold_compound_t *vc, int length)
 Sample a secondary structure of a subsequence from the Boltzmann ensemble according its probability. More...
 
char ** vrna_pbacktrack_nr (vrna_fold_compound_t *vc, int num_samples)
 Samples multiple secondary structures non-redundantly from the Boltzmann ensemble according its probability. More...
 
char * vrna_pbacktrack (vrna_fold_compound_t *vc)
 Sample a secondary structure (consensus structure) from the Boltzmann ensemble according its probability. More...
 

Detailed Description

Boltzmann Sampling of secondary structures from the ensemble.

A.k.a. Stochastic backtracking