RNAlib-2.4.4
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Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data. More...
Go to the source code of this file.
Typedefs | |
typedef void() | vrna_mfe_window_callback(int start, int end, const char *structure, float en, void *data) |
The default callback for sliding window MFE structure predictions. More... | |
Functions | |
float | vrna_mfe (vrna_fold_compound_t *vc, char *structure) |
Compute minimum free energy and an appropriate secondary structure of an RNA sequence, or RNA sequence alignment. More... | |
float | vrna_mfe_dimer (vrna_fold_compound_t *vc, char *structure) |
Compute the minimum free energy of two interacting RNA molecules. More... | |
float | vrna_mfe_window (vrna_fold_compound_t *vc, FILE *file) |
Local MFE prediction using a sliding window approach. More... | |
float | vrna_mfe_window_zscore (vrna_fold_compound_t *vc, double min_z, FILE *file) |
Local MFE prediction using a sliding window approach (with z-score cut-off) More... | |
Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data.
This file includes (almost) all function declarations within the RNAlib that are related to MFE folding...