1 #ifndef VIENNA_RNA_PACKAGE_PS_DOT_H 2 #define VIENNA_RNA_PACKAGE_PS_DOT_H 10 #ifdef VRNA_WARN_DEPRECATED 11 # if defined(__clang__) 12 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg))) 13 # elif defined(__GNUC__) 14 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg))) 16 # define DEPRECATED(func, msg) func 19 # define DEPRECATED(func, msg) func 34 #define VRNA_PLOT_PROBABILITIES_BP 1U 35 #define VRNA_PLOT_PROBABILITIES_ACC 2U 37 #define VRNA_PLOT_PROBABILITIES_UD 4U 38 #define VRNA_PLOT_PROBABILITIES_UD_LIN 8U 40 #define VRNA_PLOT_PROBABILITIES_SD 16U 42 #define VRNA_PLOT_PROBABILITIES_SC_MOTIF 32U 43 #define VRNA_PLOT_PROBABILITIES_SC_UP 64U 44 #define VRNA_PLOT_PROBABILITIES_SC_BP 128U 46 #define VRNA_PLOT_PROBABILITIES_DEFAULT ( VRNA_PLOT_PROBABILITIES_BP \ 47 | VRNA_PLOT_PROBABILITIES_SD \ 48 | VRNA_PLOT_PROBABILITIES_SC_MOTIF \ 49 | VRNA_PLOT_PROBABILITIES_UD_LIN ) 69 vrna_plot_dp_EPS(
const char *filename,
74 unsigned int options);
76 int PS_color_dot_plot(
char *
string,
80 int PS_color_dot_plot_turn(
char *seq,
110 int vrna_plot_dp_PS_list(
char *seq,
117 int PS_dot_plot_turn(
char *seq,
122 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY 141 "Use vrna_plot_dp_EPS() instead");
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structure_utils.h:114
this datastructure is used as input parameter in functions of PS_dot.c
Definition: data_structures.h:111
int PS_dot_plot(char *string, char *file)
Produce postscript dot-plot.
Various data structures and pre-processor macros.
Various utility- and helper-functions for secondary structure parsing, converting, etc.
Various functions for plotting Sequence / Structure Alignments.
Various functions for plotting RNA secondary structures.
Definition: data_structures.h:122
int PS_dot_plot_list(char *seq, char *filename, plist *pl, plist *mf, char *comment)
Produce a postscript dot-plot from two pair lists.