RNAlib-2.4.4

Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data. More...

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Typedefs

typedef void() vrna_mfe_window_callback(int start, int end, const char *structure, float en, void *data)
 The default callback for sliding window MFE structure predictions. More...
 

Functions

float vrna_mfe (vrna_fold_compound_t *vc, char *structure)
 Compute minimum free energy and an appropriate secondary structure of an RNA sequence, or RNA sequence alignment. More...
 
float vrna_mfe_dimer (vrna_fold_compound_t *vc, char *structure)
 Compute the minimum free energy of two interacting RNA molecules. More...
 
float vrna_mfe_window (vrna_fold_compound_t *vc, FILE *file)
 Local MFE prediction using a sliding window approach. More...
 
float vrna_mfe_window_zscore (vrna_fold_compound_t *vc, double min_z, FILE *file)
 Local MFE prediction using a sliding window approach (with z-score cut-off) More...
 

Detailed Description

Compute Minimum Free energy (MFE) and backtrace corresponding secondary structures from RNA sequence data.

This file includes (almost) all function declarations within the RNAlib that are related to MFE folding...