RNAlib-2.4.4
|
|
Energy evaluation of exterior loops for MFE and partition function calculations. More...
Go to the source code of this file.
Data Structures | |
struct | vrna_mx_pf_aux_el_t |
Auxiliary helper arrays for fast exterior loop computations. More... | |
Functions | |
int | vrna_E_ext_stem (unsigned int type, int n5d, int n3d, vrna_param_t *p) |
Evaluate a stem branching off the exterior loop. More... | |
FLT_OR_DBL | vrna_exp_E_ext_stem (unsigned int type, int n5d, int n3d, vrna_exp_param_t *p) |
Evaluate a stem branching off the exterior loop (Boltzmann factor version) More... | |
int | E_Stem (int type, int si1, int sj1, int extLoop, vrna_param_t *P) |
Compute the energy contribution of a stem branching off a loop-region. More... | |
FLT_OR_DBL | exp_E_ExtLoop (int type, int si1, int sj1, vrna_exp_param_t *P) |
FLT_OR_DBL | exp_E_Stem (int type, int si1, int sj1, int extLoop, vrna_exp_param_t *P) |
Energy evaluation of exterior loops for MFE and partition function calculations.