RNAlib-2.4.4
ali_plex.h
1 #ifndef VIENNA_RNA_PACKAGE_ALI_PLEX_H
2 #define VIENNA_RNA_PACKAGE_ALI_PLEX_H
3 
8 duplexT **aliLduplexfold(const char *s1[],
9  const char *s2[],
10  const int threshold,
11  const int extension_cost,
12  const int alignment_length,
13  const int delta,
14  const int fast,
15  const int il_a,
16  const int il_b,
17  const int b_a,
18  const int b_b);
19 
20 
24 duplexT **aliLduplexfold_XS(const char *s1[],
25  const char *s2[],
26  const int **access_s1,
27  const int **access_s2,
28  const int threshold,
29  const int alignment_length,
30  const int delta,
31  const int fast,
32  const int il_a,
33  const int il_b,
34  const int b_a,
35  const int b_b);
36 
37 
38 /*
39  * extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost);
40  * extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1,
41  * const int **access_s2, const int i_pos, const int j_pos, const int threshold);
42  */
43 #endif
Various data structures and pre-processor macros.
Data structure for RNAduplex.
Definition: data_structures.h:209