RNAlib-2.4.4
RNA-RNA interaction

Detailed Description

+ Collaboration diagram for RNA-RNA interaction:

Modules

 MFE Structures of two hybridized Sequences
 MFE version of cofolding routines This file includes (almost) all function declarations within the RNAlib that are related to MFE Cofolding... This also includes the Zuker suboptimals calculations, since they are implemented using the cofold routines.
 
 Partition Function for two hybridized Sequences
 Partition Function Cofolding.
 
 Partition Function for two hybridized Sequences as a stepwise Process
 RNA-RNA interaction as a stepwise process.
 

Files

file  cofold.h
 MFE implementations for RNA-RNA interaction.
 
file  concentrations.h
 Concentration computations for RNA-RNA interactions.
 
file  duplex.h
 Functions for simple RNA-RNA duplex interactions.
 
file  part_func_co.h
 Partition function for two RNA sequences.
 
file  part_func_up.h
 Implementations for accessibility and RNA-RNA interaction as a stepwise process.