RNAlib-2.4.4
concentrations.h
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1 #ifndef VIENNA_RNA_PACKAGE_CONCENTRATIONS_H
2 #define VIENNA_RNA_PACKAGE_CONCENTRATIONS_H
3 
4 #ifdef VRNA_WARN_DEPRECATED
5 # if defined(__clang__)
6 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
7 # elif defined(__GNUC__)
8 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
9 # else
10 # define DEPRECATED(func, msg) func
11 # endif
12 #else
13 # define DEPRECATED(func, msg) func
14 #endif
15 
29 
30 
31 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
32 
36 typedef struct vrna_dimer_conc_s ConcEnt;
37 
38 #endif
39 
41 #include <ViennaRNA/params.h>
42 
47  double Ac_start;
48  double Bc_start;
49  double ABc;
50  double AAc;
51  double BBc;
52  double Ac;
53  double Bc;
54 };
55 
56 
77  double FcAA,
78  double FcBB,
79  double FEA,
80  double FEB,
81  const double *startconc,
82  const vrna_exp_param_t *exp_params);
83 
84 
89 /*
90  #################################################
91  # DEPRECATED FUNCTIONS #
92  #################################################
93  */
94 
115 DEPRECATED(vrna_dimer_conc_t *get_concentrations(double FEAB,
116  double FEAA,
117  double FEBB,
118  double FEA,
119  double FEB,
120  double *startconc),
121  "Use vrna_pf_dimer_concentrations() instead");
122 
123 #endif
double Bc_start
start concentration B
Definition: concentrations.h:48
Data structure for concentration dependency computations.
Definition: concentrations.h:46
double Ac_start
start concentration A
Definition: concentrations.h:47
Functions to deal with sets of energy parameters.
The data structure that contains temperature scaled Boltzmann weights of the energy parameters...
Definition: params.h:101
double ABc
End concentration AB.
Definition: concentrations.h:49
vrna_dimer_conc_t * get_concentrations(double FEAB, double FEAA, double FEBB, double FEA, double FEB, double *startconc)
Given two start monomer concentrations a and b, compute the concentrations in thermodynamic equilibri...
vrna_dimer_conc_t * vrna_pf_dimer_concentrations(double FcAB, double FcAA, double FcBB, double FEA, double FEB, const double *startconc, const vrna_exp_param_t *exp_params)
Given two start monomer concentrations a and b, compute the concentrations in thermodynamic equilibri...
The Basic Fold Compound API.