Helix List Representation of Secondary Structures

typedef struct vrna_hx_s vrna_hx_t

Convenience typedef for data structure vrna_hx_s.

#include <ViennaRNA/structures/helix.h>

vrna_hx_t *vrna_hx_from_ptable(short *pt)

Convert a pair table representation of a secondary structure into a helix list.

#include <ViennaRNA/structures/helix.h>

Parameters:

• pt – The secondary structure in pair table representation

Returns:

The secondary structure represented as a helix list

vrna_hx_t *vrna_hx_merge(const vrna_hx_t *list, int maxdist)

Create a merged helix list from another helix list.

#include <ViennaRNA/structures/helix.h>

struct vrna_hx_s

#include <ViennaRNA/structures/helix.h>

Data structure representing an entry of a helix list.

Public Members

unsigned int start

#include <ViennaRNA/structures/helix.h>

unsigned int end

#include <ViennaRNA/structures/helix.h>

unsigned int length

#include <ViennaRNA/structures/helix.h>

unsigned int up5

#include <ViennaRNA/structures/helix.h>

unsigned int up3

#include <ViennaRNA/structures/helix.h>