TBI WORKING PAPERS 2006

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.

©NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears. If you would like to use all or a portion of any paper, please contact the author.

TBI 06-08-001 [Abstract] [Postscript] [PDF]
A Topological Approach to Chemical Organizations
Gil Benkö, Florian Centler, Peter Dittrich, Christoph Flamm, Bärbel M. R. Stadler, Peter F. Stadler
submitted to Artificial Life, Special Issue on Artifical Chemistry 2006

TBI 06-07-001 [Abstract]
Visualization of Barrier Tree Sequences
Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
submitted to InfoVis 2006

TBI 06-06-001 Preprint available on request
Structured RNAs in the ENCODE Selected Regions of the Human Genome
Stefan Washietl, Jakob S. Pedersen, Jan O. Korbel, Claudia Fried, Andreas R. Gruber, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Catherine Ucla, Stylianos E. Antonarakis, Alexandre Reymond, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R. Gingeras, Michael Snyder, Mark B. Gerstein, Ivo L. Hofacker, and Peter F. Stadler
submitted

TBI 06-05-003 [Abstract] [Postscript] [PDF]
Topology of Chemical Reaction Networks
Christoph Flamm, Peter F. Stadler
submitted to Journal of Nonlinear Science 2006

TBI 06-05-002 [Abstract] [Postscript] [PDF]
A Generalized Model of the Repressilator
Stefan Müller, Josef Hofbauer, Lukas Endler, Christoph Flamm, Stefanie Widder, Peter Schuster
submitted to Journal of Nonlinear Science 2006

TBI 06-05-001 [Abstract] [Postscript] [PDF]
RNAs Everywhere: Genome-Wide Annotation of Structured RNAs
Athanasius F. Bompfünewerer, Rolf Backofen, Stephan H. Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L. Hofacker, Kristin Missal, Axel Mosig, Sonja J. Prohaska, Dominic Rose, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
submitted to J. Exp. Zool. Part B: Mol. Devel. Evol.

TBI 06-03-002 [Abstract] [Postscript] [PDF]
A minimal and self-consistent in silico cell model based on macromolecular interactions.
Christoph Flamm, Lukas Endler, Stefan Müller, Stefanie Widder, Peter Schuster
submitted to Phil. Trans. R. Soc. B, Special Issue on Artificial Cell 2006

TBI 06-03-001 [Abstract] [Postscript] [PDF]
Exploring the lower part of discrete polymer model energy landscapes
Michael T. Wolfinger, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Peter F. Stadler
appeared in Europhys. Lett. 74(4): 726-732 (2006)

TBI 06-01-001 [Abstract] [Postscript] [PDF]
Partition Function and Base Pairing Probabilities of RNA Heterodimers
Stephan Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
submitted to Algorithms in Molecular Biology 2006

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Ivo Hofacker, <ivo@tbi.univie.ac.at>
Institut für theoretische Chemie, Währingerstr. 17, A-1090 Wien, AUSTRIA

Last modified: 2007-08-22 12:32:11 xtof