TBI WORKING PAPERS 1995

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TBI Working Papers are usually works in progress or papers submitted for publication in refereed scientific journals. They contain accounts of the scientific work of the author(s) and do not necessarily represent the views of the TBI.

© NOTICE: All papers are copyrighted by the authors; revised versions that appear in print are copyrighted by the publication in which each appears. If you would like to use all or a portion of any paper, please contact the author.

95-11-18 [abstract] [Postscript]
Beyond Digital Naturalism
W. Fontana, G. Wagner and L. W. Buss
Artificial Life 1/2: 211-227 (1994)
reprinted in: "Artificial Life: an Overview", Chris Langton (editor), pp. 211-227, MIT Press, Cambridge, MA, 1995.

95-10-17 [abstract] [Postscript]
Approximate Scaling Properties of RNA Free Energy Landscapes
Subbiah Baskaran, Peter F. Stadler, and Peter Schuster
J.Theor.Biol. 181: 299-310 (1996)

95-10-16 [abstract]
Analysis of RNA Sequence Structure Maps by Exhaustive Enumeration
Part One: Neutral Networks [Postscript]
Part Two: Structure of Neutral Networks and Shape Space Covering [Postscript]
Walter Gruener, Robert Giegerich, Dirk Strothmann, Christian Reidys, Jacqueline Weber, Ivo L. Hofacker, Peter F. Stadler, and Peter Schuster
Monatsh.Chem. 127: 355-374 (1996)
Monatsh.Chem. 127: 375-389 (1996)

95-10-15 [abstract] [Postscript]
Bio-Molecular Shapes and Algebraic Structures
Christian Reidys and Peter F. Stadler
Computers Chem. 20: 85-94 (1996)

95-10-14 [abstract] [Postscript]
Evolutionary Dynamics and Optimization: Neural Networks as Model-Landscapes for RNA Secondary-Structure Folding-Landscapes
Christian V. Forst, Christian Reidys, and Jacqueline Weber
In: F.Moran, A.Moreno, J.J.Merelo, P.Chacon (eds.): Lecture Notes in Artificial Intelligence, vol. 929: Advances in Artificial Life. Springer, Berlin, Heidelberg, New York, 1995.

95-10-13 [abstract] [Postscript]
Chaotic Interactions of Self-Replicating RNA
Christian V. Forst
Computers Chem. 20: 69-83 (1996)

95-10-12 [abstract] [Postscript]
Hamming-Chromatography
Andreas Schwienhorst, Andreas Schober, Rolf Guenther, and Peter F. Stadler
Biodiversity 1: 187-192 (1996)

95-10-11 [abstract] [Postscript]
RNA Folding and Parallel Computers: The Minimum Free Energy Structures of Complete HIV Genomes
Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, and Paul E. Stolorz
Short version published as: "Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers" In: Proceedings of the 2nd International Conference on Knowledge Discovery and Data Mining, edited by Evangelos Simoudis, Jiawei Han, amd Usama Fayyad, pp. 20-25, AAAI Press, Menlo Park CA, 1996.

95-07-10 [abstract] [Postscript: Diplomarbeit - Paper]
Segregation Distortion and Heteroclinic Cycles
Bärbel Maria Regina Stadler
J.Theor.Biol. 183: 363-379 (1996)
Diplomarbeit, Inst. f. Mathematik

95-07-09 [abstract] [Postscript]
Random Field Models for Fitness Landscapes
Peter F. Stadler and Robert Happel
J.Math.Biol. 38: 435-478 (1999).

95-07-08 [abstract] [Postscript]
Canonical Approximation of Fitness Landscapes
Robert Happel and Peter F. Stadler
Complexity 2: 53-58 (1996)

95-07-07 [abstract] [Postscript]
Landscapes and Their Correlation Functions
Peter F. Stadler
J.Math.Chem. 20: 1-45 (1996)

95-07-06 [abstract] [Postscript]
Autocatalytic Networks with Translation
Robert Happel, Robert Hecht, and Peter F. Stadler
Bull.Math.Biol. 58: 877-905 (1996)

95-07-05 [abstract] [Postscript]]
Autocatalytic Replication in a CSTR and Constant Organization
Robert Happel and Peter F. Stadler
J.Math.Biol. 38: 422-434 (1999)

95-07-04 [abstract] [Postscript]
Generic Properties of Combinatory Maps: Neural Networks of RNA Secondary Structures
Christian Reidys, Peter F. Stadler, and Peter Schuster
Bull.Math.Biol. 59: 339-397 (1997)

95-07-03 [abstract] [Postscript]
Base Pairing Probabilities in a Complete HIV-1 RNA
Martijn A. Huynen, Alan S. Perelson, Wayne A. Vieira, and Peter F. Stadler
J.Comp.Biol. 3: 253-274 (1996)

95-01-02 [abstract] [Postscript]
Smoothness within ruggedness: the role of neutrality in adaptation}
Martijn Huynen, Peter Stadler, and Walter Fontana
Proc.Natl.Acad.Sci.(USA) 93: 397-401 (1996)

95-01-01 [No Abstract] [Postscript]
Towards a Theory of Landscapes.
Peter F. Stadler
In: Complex Systems and Binary Networks (Proceeding of the Guanajuato Lectures 1995) R. Lopéz-Peña, R. Capovilla, R. García-Pelayo, H. Waelbroeck, and F. Zertuche (eds.), Springer-Verlag (1996), pp.77-163.

95-IMB1 [abstract] [Postscript]
Evolutionary Dynamics and Optimization
Christian V. Forst, Christian Reidys, and Jacqueline Weber
In: F.Moran, A.Moreno, J.J.Merelo, P.Chacon (eds.): Lecture Notes in Artificial Intelligence, vol. 929: Advances in Artificial Life. Springer, Berlin, Heidelberg, New York, 1995, pp.128-147.

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