TBI-p-2012-6

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Titel:
Folding RNA/DNA hybrid duplexes

Author(s):
Ronny Lorenz, Ivo L Hofacker and Stephan H Bernhart

submitted to:
Bioinformatics

Abstract:
Motivation: While there are numerous programs that can predict RNA or DNA secondary structures, a program that predicts RNA/DNA hetero-dimers is still missing. The lack of easy to use tools for predicting their structure may be in part responsible for the small number of reports of biologically relevant RNA/DNA hetero-dimers. Results: We present here an extension to the widely used ViennaRNA Package (Lorenz et al., 2011) for the prediction of the structure of RNA/DNA hetero-dimers. Availability: http://www.tbi.univie.ac.at/~ronny/RNA/vrna2.html

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