Hammerhead ribozyme type III test set (N=2)

There are 94 alignments in the test set.

#1

Mean pairwise ID: 65.45%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
                         ** ***   *     *** ****** *** * **** *** * ******* ** 

[Download ClustalW]

#2

Mean pairwise ID: 65.45%

AJ536620.1/206-152      CCACCGTCGGAAAGTGTGCGCTTTCCCTGATGAGCCCAAAAGGGCGAAACGGTAC
M63666.1/246-192        CCGGTGTCTCAAGGTGCGTACCTTGACTGATGAGTCCGAAAGGACGAAACACCAG
                        **   ***  ** *** *  * **  ******** ** ***** ******   * 

[Download ClustalW]

#3

Mean pairwise ID: 66.67%

AF170498.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCGTTGAGATACGGCGAAACTTATG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         * *     * ******* ********** *  ******  * *******  * 

[Download ClustalW]

#4

Mean pairwise ID: 66.67%

AJ005305.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ***     * *** *** ****** *** * *** ***  * ******* ** 

[Download ClustalW]

#5

Mean pairwise ID: 66.67%

AF170503.1/55-3         CATAAGTCTGGGCTTAGC-CACTGACGAGTCGCTGGGATACGGCGAAACTTATG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         * *     * ******* ****** ***** *** ***  * *******  * 

[Download ClustalW]

#6

Mean pairwise ID: 67.27%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AF170498.1/56-3         -CATAAGTCTGGGCTTAGCCCACTGATGAGCCGTTGAGATACGGCGAAACTTATG
                          * *   *** ******* ****** *** *  ******  * *******  * 

[Download ClustalW]

#7

Mean pairwise ID: 68.52%

AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ***     * *** *** ***********  **** * *  ******** ** 

[Download ClustalW]

#8

Mean pairwise ID: 68.52%

AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         * *     * ******* ***********  *** ****  ********  * 

[Download ClustalW]

#9

Mean pairwise ID: 69.09%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AJ550909.1/56-3         -CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                          * *   *** ******* ****** ****  *** ****  ********  * 

[Download ClustalW]

#10

Mean pairwise ID: 70.37%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                         *  ****** *** *** ***********   ** ***   ********  * 

[Download ClustalW]

#11

Mean pairwise ID: 70.37%

AF170520.1/55-3         CAAAAGTCTGGGCTTAGC-CACTGATGAGCCGTTGAGATACGGCGAAACTTTTG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ***     * ******* ********** *  ******  * ******* ** 

[Download ClustalW]

#12

Mean pairwise ID: 70.37%

AJ550545.1/56-3         CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         *  ****** *** *** **** ***** ** ** **  ** *******  * 

[Download ClustalW]

#13

Mean pairwise ID: 70.37%

M83545.1/56-3           CATAAGTCTGGGCTAAGCCCACTGATGAGTCGCTGAAATGCGACGAAACTTATG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         * *     * *** *** ************ **** *** *********  * 

[Download ClustalW]

#14

Mean pairwise ID: 70.37%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ***     * *** *** ********** * **** *** * ******* ** 

[Download ClustalW]

#15

Mean pairwise ID: 70.37%

AF170503.1/55-3         CATAAGTCTGGGCTTAGC-CACTGACGAGTCGCTGGGATACGGCGAAACTTATG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         * * ***** ******* ***********  ***  **    ****** * * 

[Download ClustalW]

#16

Mean pairwise ID: 70.91%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170503.1/281-332      -AAAGGTCTGTGCTTA-GCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         *** ** ** *** * ** ****** ***   ********   ****** *** 

[Download ClustalW]

#17

Mean pairwise ID: 70.91%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AJ241843.1/56-3         -CATAAGTCTGGGCTTAGCCCACTGATGAGCCACTGAAATGCGGCGAAACTTTTG
                          * *   *** ******* ****** *** * **** *** * ******* ** 

[Download ClustalW]

#18

Mean pairwise ID: 71.70%

AJ550907.1/281-333      AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
AF170503.1/281-332      AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                        ****    * ******* ****** ****  **** ***  *******  ** 

[Download ClustalW]

#19

Mean pairwise ID: 72.22%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AJ005305.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
                         ** ****** *** *** ****** *** * ***  **  * ******* ** 

[Download ClustalW]

#20

Mean pairwise ID: 72.22%

AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         * * ***** ******* ****** ****  ***  ***  ******* * * 

[Download ClustalW]

#21

Mean pairwise ID: 72.22%

AJ241838.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCTGCTGAAATGCGGCAAAACTTTTG
AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
                         ** ****** ******* **********    *** **  * * ***** ** 

[Download ClustalW]

#22

Mean pairwise ID: 72.22%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AF170520.1/55-3         CAAAAGTCTGGGCTTAGC-CACTGATGAGCCGTTGAGATACGGCGAAACTTTTG
                         *  ****** *** *** ********** *  *** **  * *******  **

[Download ClustalW]

#23

Mean pairwise ID: 72.22%

AF170498.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCGTTGAGATACGGCGAAACTTATG
AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         *  ****** ******* **** ***** *  ******  * *******  * 

[Download ClustalW]

#24

Mean pairwise ID: 72.22%

AJ005305.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
                         *  ****** ******* ****** *** * ***  **  * *******  **

[Download ClustalW]

#25

Mean pairwise ID: 72.22%

AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
AJ550907.1/281-333      -AAAGAGTCGCGCTTAGCGCACTGATGAGTCTCTGAGATGAGACGAAACTCTTC
                         * *     * ******* ************ *** **** *********  * 

[Download ClustalW]

#26

Mean pairwise ID: 72.22%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
AF170503.1/55-3         CATAAGTCTGGGCTTAGC-CACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                         *  ****** *** *** ****** *****  ** **** * *******  * 

[Download ClustalW]

#27

Mean pairwise ID: 72.22%

AJ005305.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ** ****** *** *** **** * *** * *** ***  * ******* ** 

[Download ClustalW]

#28

Mean pairwise ID: 72.22%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AF170503.1/55-3         CATAAGTCTGGGCTTAGC-CACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                         *  ****** ******* ****** ***** ***  **  * *******  * 

[Download ClustalW]

#29

Mean pairwise ID: 72.73%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AF170503.1/281-332      --AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                          * **  *** ******* ***********  **** ***  *******  ** 

[Download ClustalW]

#30

Mean pairwise ID: 72.73%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AJ550906.1/56-3         -CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                          * *   *** ******* ****** ***** *** **** *********  * 

[Download ClustalW]

#31

Mean pairwise ID: 72.73%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550908.1/281-334      GAAGAGTCTGCGCTTA-GCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ** *** ** *** * ** **** ***** * **** *** * ******* ** 

[Download ClustalW]

#32

Mean pairwise ID: 74.07%

M83545.1/56-3           CATAAGTCTGGGCTAAGCCCACTGATGAGTCGCTGAAATGCGACGAAACTTATG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         * * ***** *** *** ****** ****  ********  ******* * * 

[Download ClustalW]

#33

Mean pairwise ID: 74.07%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                         *  ****** *** *** ************  ** ***  *********  * 

[Download ClustalW]

#34

Mean pairwise ID: 74.07%

AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                         *  ****** ******* **** ******  *** ****  ********  * 

[Download ClustalW]

#35

Mean pairwise ID: 74.07%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AF170520.1/55-3         CAAAAGTCTGGGCTTAGC-CACTGATGAGCCGTTGAGATACGGCGAAACTTTTG
                         * ******* *** *** ********** *  *** **  * ******** * 

[Download ClustalW]

#36

Mean pairwise ID: 74.07%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         *** ***** *** *** ****** ***   ********   ****** *** 

[Download ClustalW]

#37

Mean pairwise ID: 74.07%

AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                         ** ****** *** *** **** ******  **** * *  ******** ** 

[Download ClustalW]

#38

Mean pairwise ID: 74.55%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AF170496.1/56-3         CAAAAGTC-TGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
                         ** **** ** *** *** ****** *** * **** *** * ******* ** 

[Download ClustalW]

#39

Mean pairwise ID: 74.55%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AF170520.1/55-3         CAAAAGTC-TGGGCTTAGC-CACTGATGAGCCGTTGAGATACGGCGAAACTTTTG
                         ** **** ** ******* ****** *** *  ******  * ******* ** 

[Download ClustalW]

#40

Mean pairwise ID: 74.55%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AJ005305.1/56-3         CAAAAGTC-TGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
                         ** **** ** *** *** ********** * *** ***  * ******* ** 

[Download ClustalW]

#41

Mean pairwise ID: 74.55%

AJ536613.1/205-151      CCACCGTCGGAAAGTGTGTACTTTCCCTGATGAGTCCGAAAGGACGAAACGGTAC
M63666.1/246-192        CCGGTGTCTCAAGGTGCGTACCTTGACTGATGAGTCCGAAAGGACGAAACACCAG
                        **   ***  ** *** **** **  ************************   * 

[Download ClustalW]

#42

Mean pairwise ID: 75.93%

AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         * * ***** ******* ****** ***** ***  *** ******** * * 

[Download ClustalW]

#43

Mean pairwise ID: 75.93%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AF170503.1/55-3         CATAAGTCTGGGCTTAGC-CACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                         ** ****** *** *** ****** ***** ***  **  * ******* ***

[Download ClustalW]

#44

Mean pairwise ID: 75.93%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         ** ****** *** *** **** ***** * **** *** * ******* ** 

[Download ClustalW]

#45

Mean pairwise ID: 75.93%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
M83545.1/56-3           CATAAGTCTGGGCTAAGCCCACTGATGAGTCGCTGAAATGCGACGAAACTTATG
                         *  ****** ******* ************  *** **  *********  * 

[Download ClustalW]

#46

Mean pairwise ID: 75.93%

AF170498.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCGTTGAGATACGGCGAAACTTATG
AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
                         *  ****** *** *** ********** * ******** * *******  * 

[Download ClustalW]

#47

Mean pairwise ID: 75.93%

AJ005305.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
                         ** ****** ******* ****** *** *  ** **** * ******* ** 

[Download ClustalW]

#48

Mean pairwise ID: 76.36%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ241845.1/282-335      GATGAGTCTGTGCTAA-GCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
                         *  *** ** ***** ** ********** * ******** * *******  **

[Download ClustalW]

#49

Mean pairwise ID: 76.36%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170498.1/283-336      GAAGAGTCTGTGCTTA-GCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
                         ** *** ** *** * ** ********** * ******** * ******* ** 

[Download ClustalW]

#50

Mean pairwise ID: 77.78%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ241838.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCTGCTGAAATGCGGCAAAACTTTTG
                         * ******* ******* **********   ******** * * ****** * 

[Download ClustalW]

#51

Mean pairwise ID: 77.78%

AJ550545.1/56-3      CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
AJ550911.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                     ** **************************    **  **    ******** **

[Download ClustalW]

#52

Mean pairwise ID: 77.78%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
AJ550545.1/56-3         CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
                         *  ****** ******* ********** ***** ** *** *******  * 

[Download ClustalW]

#53

Mean pairwise ID: 77.78%

AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
AJ550908.1/281-334      GAAGAGTCTGCGCTTAGCGCACTCATGAGTCTCTGAGATGAGACGAAACTCTTC
                         *  ****** ******* **** ******* *** **** *********  * 

[Download ClustalW]

#54

Mean pairwise ID: 77.78%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                         *  ****** ******* ************ ***  *** *********  * 

[Download ClustalW]

#55

Mean pairwise ID: 77.78%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                         ** ****** *** *** ***********  ***  ***  ******** ***

[Download ClustalW]

#56

Mean pairwise ID: 77.78%

AJ550911.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
AF170503.1/55-3      CATAAGTCTGGGCTTAGCC-ACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                     ** *********** **** ***** **** ****  *  *  ******** **

[Download ClustalW]

#57

Mean pairwise ID: 77.78%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                         ** ****** *** *** ***********  ****** *  ******** ** 

[Download ClustalW]

#58

Mean pairwise ID: 77.78%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                         *  ****** ******* ***********  ****** *  ********  **

[Download ClustalW]

#59

Mean pairwise ID: 77.78%

AJ550912.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         *** ***** *** *** ****** ***** **** ***  ******* *** 

[Download ClustalW]

#60

Mean pairwise ID: 78.18%

AJ241841.1/57-3         CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170504.1/284-337      GATAAGTCTGTGCTAA-GCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
                         * **** ** ***** ** ********** * ******** * ******** * 

[Download ClustalW]

#61

Mean pairwise ID: 79.63%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AJ550912.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
                         ** ****** *** *** ***********  **** *** ********* ** 

[Download ClustalW]

#62

Mean pairwise ID: 79.63%

AJ241843.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCACTGAAATGCGGCGAAACTTTTG
AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
                         ** ****** *** *** ********** * ******** * *******  **

[Download ClustalW]

#63

Mean pairwise ID: 79.63%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                         * ******* ******* ***********  ****** *  ********* * 

[Download ClustalW]

#64

Mean pairwise ID: 79.63%

AF170498.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGCCGTTGAGATACGGCGAAACTTATG
AJ550911.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                     ** *********** **************  * *** *  *  ******** **

[Download ClustalW]

#65

Mean pairwise ID: 79.63%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
M83545.1/56-3           CATAAGTCTGGGCTAAGCCCACTGATGAGTCGCTGAAATGCGACGAAACTTATG
                         *  ****** *** *** ************ ******** *********  * 

[Download ClustalW]

#66

Mean pairwise ID: 79.63%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AJ241843.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCACTGAAATGCGGCGAAACTTTTG
                         *  ****** ******* ********** * ******** * ******* ** 

[Download ClustalW]

#67

Mean pairwise ID: 79.63%

AJ550545.1/56-3      CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
AJ550912.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
                     ** **************************    ** **   * ******** **

[Download ClustalW]

#68

Mean pairwise ID: 79.63%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ550909.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                         ********* *** *** ***********  ***  ***  *********** 

[Download ClustalW]

#69

Mean pairwise ID: 79.63%

AJ550911.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         *** ***** *** *** ****** ***** ****** * ******** *** 

[Download ClustalW]

#70

Mean pairwise ID: 79.63%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
                         ** ****** *** *** ********** * ******** * ******* ** 

[Download ClustalW]

#71

Mean pairwise ID: 79.63%

AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
AF170520.1/55-3         CAAAAGTCTGGGCTTAGC-CACTGATGAGCCGTTGAGATACGGCGAAACTTTTG
                         ** ****** *** *** ********** * ******** * ******* ** 

[Download ClustalW]

#72

Mean pairwise ID: 79.63%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
                         *  ****** ******* ********** * ******** * *******  **

[Download ClustalW]

#73

Mean pairwise ID: 79.63%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AJ550912.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
                         *  ****** ******* ***********  **** *** *********  **

[Download ClustalW]

#74

Mean pairwise ID: 79.63%

AF170498.1/283-336      GAAGAGTCTGTGCTTAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCTTC
AF170503.1/281-332      -AAAGGTCTGTGCTTAGCACACTGACGAGTTCCTGAAATGGAACGAAACCTTT-
                         **  ******************** ****  ********  *******  ** 

[Download ClustalW]

#75

Mean pairwise ID: 80.00%

AJ241841.1/57-3      CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550909.1/56-3      CATAAGTCTGGGCTTA-GCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                     ** **** ****** * *************  ****  ****  ******** **

[Download ClustalW]

#76

Mean pairwise ID: 80.00%

AJ241841.1/57-3      CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550545.1/56-3      CATAAGTCTGGGCTAA-GCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
                     ** **** ******** ***************  **  *   ********** **

[Download ClustalW]

#77

Mean pairwise ID: 81.48%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ241843.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGCCACTGAAATGCGGCGAAACTTTTG
                         ********* *** *** ********** * ******** * ******** * 

[Download ClustalW]

#78

Mean pairwise ID: 81.48%

AJ005305.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ550909.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                     ** *********** ********** ***  **** *** *  ******** **

[Download ClustalW]

#79

Mean pairwise ID: 81.48%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ550912.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
                         * ******* ******* ***********  **** *** ********** * 

[Download ClustalW]

#80

Mean pairwise ID: 81.48%

AJ550545.1/56-3      CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
AJ550909.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                     ************** **************    *****     ***********

[Download ClustalW]

#81

Mean pairwise ID: 81.48%

AJ241845.1/282-335      GATGAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                         ** ****** *** *** ************ ***  *** ********* ***

[Download ClustalW]

#82

Mean pairwise ID: 81.48%

AF170496.1/56-3         CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
                         * ******* ******* ********** * ******** * ******** * 

[Download ClustalW]

#83

Mean pairwise ID: 81.82%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AF170504.1/284-337      GATAAGTC-TGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
                        **  **** ** *** *** ****** ********** *************  **

[Download ClustalW]

#84

Mean pairwise ID: 83.33%

AJ241843.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGCCACTGAAATGCGGCGAAACTTTTG
AJ550545.1/56-3      CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
                     ************** ****************  **  *   ********** **

[Download ClustalW]

#85

Mean pairwise ID: 83.33%

AF170496.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550909.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGTTGCTGCGATGCAACGAAACTTATG
                     ** *********** **************  ****  ****  ******** **

[Download ClustalW]

#86

Mean pairwise ID: 83.33%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ550545.1/282-335      GAAGAGTCTGCGCTAAGCGCACTGATGAGTCTTTGAGATAAGACGAAACTCTTC
                        **  ****** ******* ************* *** ** **********  **

[Download ClustalW]

#87

Mean pairwise ID: 83.33%

AF170504.1/284-337      GATAAGTCTGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTTATC
AJ550906.1/56-3         CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                         ********* *** *** ************ ***  *** ************ 

[Download ClustalW]

#88

Mean pairwise ID: 83.33%

AJ241838.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGCTGCTGAAATGCGGCAAAACTTTTG
AJ550906.1/56-3      CATAAGTCTGGGCTTAGCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                     ** *********** **************  ****  ***** * ****** **

[Download ClustalW]

#89

Mean pairwise ID: 83.33%

AJ550545.1/56-3      CATAAGTCTGGGCTAAGCCCACTGATGAGCCTTTGCGACAAGGCGAAACTTATG
AF170503.1/55-3      CATAAGTCTGGGCTTAGCC-ACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                     ************** **** ***** *** *  ** ** * *************

[Download ClustalW]

#90

Mean pairwise ID: 83.33%

AJ550912.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAGATGCGACGAAACTTTTG
AF170503.1/55-3      CATAAGTCTGGGCTTAGCC-ACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                     ** *********** **** ***** **** **** *** ** ******** **

[Download ClustalW]

#91

Mean pairwise ID: 83.33%

AF170496.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AF170503.1/55-3      CATAAGTCTGGGCTTAGCC-ACTGACGAGTCGCTGGGATACGGCGAAACTTATG
                     ** *********** **** ***** *** *****  ** *********** **

[Download ClustalW]

#92

Mean pairwise ID: 83.33%

AJ005305.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGACGAGCCGCTGGGATACGGCGAAACTTTTG
AJ550911.1/56-3      CAAAAGTCTGGGCTAAGCCCACTGATGAGTTGCTGAAACGCAACGAAACTTTTG
                     ************************* ***  ****  *  *  ***********

[Download ClustalW]

#93

Mean pairwise ID: 83.64%

AJ241841.1/57-3      CAAAAGTTTGGGCTAAAGCCCACTGATGAGCCGCTGAAATGCGGCGAAACTTTTG
AJ550906.1/56-3      CATAAGTCTGGGCTTA-GCCCACTGATGAGTCGCTGCGATGCGACGAAACTTATG
                     ** **** ****** * ************* *****  ***** ******** **

[Download ClustalW]

#94

Mean pairwise ID: 83.64%

AJ550910.1/282-336      GAAGAGTCCTGCGCTTAGCGCACTGACGAGTCTCTGAGATGAGACGAAACTCTTC
AJ241845.1/282-335      GATGAGTC-TGTGCTAAGCACACTGATGAGTCTCTGAAATGAGACGAAACTCATG
                        ** ***** ** *** *** ****** ********** ************** * 

[Download ClustalW]