Mousebrain 454

sorted by number

annotation	number of reads	location	strand	strand (annotation)	length and sequence of contig	sequence of reads	visualization	Repeat
RF00439,SNORD87	62	chr1 9932539 - 9932627 UCSC	-1	-1	88	reads	graphics	-
mm1	37	chr1 15140332 - 15140356 UCSC	1		24	reads	graphics	-
mmu-mir-30a [Source:	31	chr1 23279113 - 23279137 UCSC	1	1	24	reads	graphics	-
mmu-mir-30a [Source:	22	chr1 23279154 - 23279179 UCSC	1	1	25	reads	graphics	-
RF00578,SNORD89	57	chr1 39605676 - 39605697 UCSC	-1	-1	21	reads	graphics	-
BLAST:mmu-mir-9-2MI0	3	chr1 55040840 - 55040866 UCSC	1		26	reads	graphics	-
sno-ncRNA.org,FR0349	4	chr1 59761636 - 59761725 UCSC	1	1	89	reads	graphics	-
RF00004,U2	11	chr1 72272962 - 72273007 UCSC	1	1	45	reads	graphics	-
mmu-mir-26b [Source:	10	chr1 74440898 - 74440921 UCSC	1	1	23	reads	graphics	-
mmu-mir-375 [Source:	27	chr1 74947230 - 74947257 UCSC	-1	-1	27	reads	graphics	-
RF00217,SNORD20	25	chr1 88248571 - 88248664 UCSC	-1	-1	93	reads	graphics	-
BLAST:protein:kinesi intron (7385)	4	chr1 94986443 - 94986539 UCSC	-1	-1	96	reads	graphics	-
RF00618,U4atac	44	chr1 120355703 - 120355843 UCSC	-1	-1	140	reads	graphics	-
mmu-mir-128-1 [Sourc	14	chr1 130098981 - 130099007 UCSC	1	1	26	reads	graphics	-
piRNA-ncRNA.org,FR25	3	chr1 138261510 - 138261543 UCSC	1	1	33	reads	graphics	-
mmu-mir-181a-1 [Sour	129	chr1 139863042 - 139863073 UCSC	1	1	31	reads	graphics	-
mmu-mir-181a-1 [Sour	4	chr1 139863085 - 139863107 UCSC	1	1	22	reads	graphics	-
mmu-mir-181b-1 [Sour	283	chr1 139863227 - 139863255 UCSC	1	1	28	reads	graphics	-
RF00284,SNORD74	28	chr1 162965531 - 162965586 UCSC	1	1	55	reads	graphics	-
RF00612,SNORD75	8	chr1 162965981 - 162966055 UCSC	1	1	74	reads	graphics	-
RF00069,SNORD24	96	chr1 162966188 - 162966281 UCSC	1	1	93	reads	graphics	-
RF00287,SNORD44	21	chr1 162966813 - 162966879 UCSC	1	1	66	reads	graphics	-
RF00152,SNORD79	11	chr1 162967490 - 162967579 UCSC	1	1	89	reads	graphics	-
RF00309,snosnR60_Z15	72	chr1 162967734 - 162967815 UCSC	1	1	81	reads	graphics	-
RF00281,SNORD47	5	chr1 162968209 - 162968297 UCSC	1	1	88	reads	graphics	-
RF00136,SNORD81	18	chr1 162968441 - 162968518 UCSC	1	1	77	reads	graphics	-
mmu-mir-199a-2 [Sour	4	chr1 164148014 - 164148037 UCSC	1	1	23	reads	graphics	-
mmu-mir-29c [Source:	41	chr1 196863793 - 196863819 UCSC	1	1	26	reads	graphics	-
RF00100,7SK	6	chr2 6997225 - 6997305 UCSC	-1	-1	80	reads	graphics	-
RF00100,7SK	3	chr2 6997368 - 6997465 UCSC	-1	-1	97	reads	graphics	-
BLAST:protein:Rho GT intron (7818)	5	chr2 20821623 - 20821652 UCSC	1	-1	29	reads	graphics	-
piRNA-ncRNA.org,FR22	8	chr2 22600401 - 22600443 UCSC	-1	-1	42	reads	graphics	-
mmu-mir-126 [Source:	117	chr2 26446883 - 26446909 UCSC	1	1	26	reads	graphics	-
mmu-mir-126 [Source:	83	chr2 26446922 - 26446948 UCSC	1	1	26	reads	graphics	-
RF00069,SNORD24	28	chr2 26766781 - 26766834 UCSC	1	1	53	reads	graphics	-
RF00049,SNORD36	7	chr2 26768050 - 26768126 UCSC	1	1	76	reads	graphics	-
RF00049,SNORD36	3	chr2 26768369 - 26768435 UCSC	1	1	66	reads	graphics	-
mmu-mir-219-2 [Sourc	4	chr2 29701202 - 29701229 UCSC	-1	-1	27	reads	graphics	-
RF00393,SNORA8	4	chr2 32530627 - 32530780 UCSC	1	1	153	reads	graphics	-
RF00579,SNORD90	9	chr2 37255577 - 37255660 UCSC	-1	-1	83	reads	graphics	-
mmu-mir-181b-2 [Sour	31	chr2 38709365 - 38709393 UCSC	1	1	28	reads	graphics	-
mm37	5	chr2 69193591 - 69193624 UCSC	-1		33	reads	graphics	L1Md_F2
RF00573,SNORD67	13	chr2 91436230 - 91436347 UCSC	1	1	117	reads	graphics	-
mmu-mir-129-2 [Sourc	4	chr2 94081574 - 94081596 UCSC	-1	-1	22	reads	graphics	-
RF00003,U1	5	chr2 117074004 - 117074204 UCSC	1	1	200	reads	graphics	-
RF00007,U12	5	chr2 129141061 - 129141102 UCSC	-1	-1	41	reads	graphics	-
unclass-ncRNA.org,FR	14	chr2 129998636 - 129998714 UCSC	-1	-1	78	reads	graphics	-
RF00610,SNORD110	53	chr2 130101242 - 130101318 UCSC	1	1	76	reads	graphics	-
sno-ncRNA.org,FR1469	5	chr2 130102933 - 130103025 UCSC	1	1	92	reads	graphics	-
mmu-mir-103-2 [Sourc	80	chr2 131113839 - 131113872 UCSC	1	1	33	reads	graphics	-
RF00019,Y	165	chr2 158313391 - 158313428 UCSC	1	1	37	reads	graphics	-
mm514 protein:juncto intron (8062)	3	chr2 163214799 - 163214823 UCSC	-1	-1	24	reads	graphics	-
RF00581,SNORD12	135	chr2 166890503 - 166890597 UCSC	1	1	94	reads	graphics	-
RF00581,SNORD12	3	chr2 166890781 - 166890865 UCSC	1	1	84	reads	graphics	-
piRNA-ncRNA.org,FR09	5	chr3 5860710 - 5860774 UCSC	1	1	64	reads	graphics	-
tRNA-Tyr-GTA,TRNA28	3	chr3 19528835 - 19528893 UCSC	1	1	58	reads	graphics	-
mmu-mir-15b [Source:	26	chr3 68813697 - 68813728 UCSC	1	1	31	reads	graphics	-
RF00071,SNORD73	3	chr3 85942709 - 85942780 UCSC	-1	-1	71	reads	graphics	-
RF00071,SNORD73	193	chr3 85944531 - 85944610 UCSC	-1	-1	79	reads	graphics	-
mmu-mir-9-1 [Source:	3	chr3 88019536 - 88019559 UCSC	1	1	23	reads	graphics	-
mmu-mir-9-1 [Source:	6	chr3 88019574 - 88019612 UCSC	1	1	38	reads	graphics	-
mmu-mir-92b [Source:	14	chr3 89031042 - 89031069 UCSC	-1	-1	27	reads	graphics	-
tRNA-His-GTG,TRNA291	12	chr3 96213992 - 96214038 UCSC	1	1	46	reads	graphics	-
RF00003,U1	5	chr3 96292726 - 96292826 UCSC	1	1	100	reads	graphics	-
mmu-mir-137 [Source:	173	chr3 118136817 - 118136846 UCSC	1	1	29	reads	graphics	-
RF00399,SNORA24	12	chr3 123210852 - 123210882 UCSC	-1	-1	30	reads	graphics	-
RF00279,SNORD45	3	chr3 153575092 - 153575169 UCSC	-1	-1	77	reads	graphics	-
BLAST:mmu-mir-22MI00	6	chr4 30492664 - 30492690 UCSC	1		26	reads	graphics	-
mm89	4	chr4 34315015 - 34315040 UCSC	1		25	reads	graphics	ORR1B2-int
RNaseMRP-ncRNA.org,F	4	chr4 43505646 - 43505675 UCSC	-1	-1	29	reads	graphics	-
RF00003,U1	5	chr4 51825343 - 51825443 UCSC	-1	-1	100	reads	graphics	-
RF00001,5S_rRNA	9	chr4 53873524 - 53873658 UCSC	1	1	134	reads	graphics	-
mm94	4	chr4 65595642 - 65595665 UCSC	1		23	reads	graphics	L1_Mus3
RF00015,U4	51	chr4 83173526 - 83173672 UCSC	-0.96	-1	146	reads	graphics	-
mmu-mir-31 [Source:m	9	chr4 88556514 - 88556539 UCSC	-1	-1	25	reads	graphics	-
RF00019,Y	34	chr4 97942417 - 97942456 UCSC	1	1	39	reads	graphics	-
mmu-mir-101a [Source	47	chr4 101019559 - 101019583 UCSC	-1	-1	24	reads	graphics	-
RF00212,SNORD38	9	chr4 116826690 - 116826767 UCSC	-1	-1	77	reads	graphics	-
RF00218,SNORD46	76	chr4 116827783 - 116827894 UCSC	-1	-1	111	reads	graphics	-
RF00157,SNORD55	344	chr4 116828365 - 116828456 UCSC	-1	-1	91	reads	graphics	-
RF00020,U5	6	chr4 116862603 - 116862667 UCSC	1	1	64	reads	graphics	-
mmu-mir-30e [Source:	18	chr4 120445258 - 120445286 UCSC	-1	-1	28	reads	graphics	-
RF00188,SNORD103	9	chr4 130305551 - 130305623 UCSC	1	1	72	reads	graphics	-
RF00548,U11	7	chr4 131825992 - 131826123 UCSC	-1	-1	131	reads	graphics	-
RF00405,SNORA44	3	chr4 131865856 - 131866001 UCSC	1	1	145	reads	graphics	-
RF00420,SNORA61	4	chr4 131866155 - 131866282 UCSC	1	1	127	reads	graphics	-
RF00608,SNORD99	7	chr4 131866608 - 131866673 UCSC	1	1	65	reads	graphics	-
RF00045,SNORA73	3	chr4 131908676 - 131908837 UCSC	-1	-1	161	reads	graphics	-
mm115	4	chr5 26616887 - 26616911 UCSC	1		24	reads	graphics	Lx9
RF00068,SNORD21	24	chr5 108333572 - 108333677 UCSC	1	1	105	reads	graphics	-
RF00015,U4	3	chr5 115939508 - 115939618 UCSC	1	1	110	reads	graphics	-
RF00015,U4	3	chr5 115940315 - 115940415 UCSC	1	1	100	reads	graphics	-
RF00406,SNORA42	3	chr5 121655017 - 121655162 UCSC	1	1	145	reads	graphics	-
mm134	3	chr5 122902304 - 122902328 UCSC	1		24	reads	graphics	-
RF00601,SCARNA20	4	chr5 135529868 - 135529989 UCSC	-1	-1	121	reads	graphics	-
mmu-mir-25 [Source:m	130	chr5 138606553 - 138606582 UCSC	-1	-1	29	reads	graphics	-
mmu-mir-93 [Source:m	18	chr5 138606797 - 138606825 UCSC	-1	-1	28	reads	graphics	-
mmu-mir-106b [Source	205	chr5 138607012 - 138607040 UCSC	-1	-1	28	reads	graphics	-
Infernal:snoReport:H intron (84)	4	chr5 145532203 - 145532377 UCSC	1	1	174	reads	graphics	-
piRNA-ncRNA.org,FR27	3	chr5 147072704 - 147072803 UCSC	1	1	99	reads	graphics	-
mm566 protein:cyclin intron (1703)	3	chr5 147072860 - 147072939 UCSC	1	1	79	reads	graphics	LSU-rRNA_Hsa
RF00187,SNORD102	31	chr5 147646411 - 147646486 UCSC	1	1	75	reads	graphics	-
mm568 protein:furry intron (63445)	3	chr5 151256879 - 151256905 UCSC	1	1	26	reads	graphics	MTC
RF00177,SSU_rRNA_5	3	chr6 3151097 - 3151151 UCSC	1	1	54	reads	graphics	-
mmu-mir-335 [Source:	4	chr6 30691314 - 30691337 UCSC	1	1	23	reads	graphics	-
mmu-mir-29a [Source:	23	chr6 31012670 - 31012694 UCSC	-1	-1	24	reads	graphics	-
snRNA-ncRNA.org,FR28	11	chr6 47600762 - 47600854 UCSC	-1	-1	92	reads	graphics	-
snRNA-ncRNA.org,FR38	3	chr6 47622297 - 47622398 UCSC	-1	-1	101	reads	graphics	-
snRNA-ncRNA.org,FR38	34	chr6 47713251 - 47713356 UCSC	-1	-1	105	reads	graphics	-
RF00019,Y	15	chr6 47731623 - 47731729 UCSC	1	1	106	reads	graphics	-
RF00019,Y	38	chr6 47738061 - 47738179 UCSC	-1	-1	118	reads	graphics	-
RF00613,SNORD94	23	chr6 71832548 - 71832688 UCSC	-1	-1	140	reads	graphics	-
RF00092,SNORA63	12	chr6 97497422 - 97497562 UCSC	-1	-1	140	reads	graphics	-
mm163	12	chr6 109246863 - 109246887 UCSC	-1		24	reads	graphics	MTC-int
RF00409,SNORA7	13	chr6 115757989 - 115758132 UCSC	-1	-1	143	reads	graphics	-
RF00564,SCARNA11	3	chr6 125071741 - 125071883 UCSC	1	1	142	reads	graphics	-
BLAST:gnl\|combinedli	12	chr6 131428674 - 131428743 UCSC	-1		69	reads	graphics	-
tRNA-SeC[e]-TCA,TRNA	13	chr7 19886592 - 19886652 UCSC	1	1	60	reads	graphics	-
RF00604,SNORD88	3	chr7 51503463 - 51503557 UCSC	1	1	94	reads	graphics	-
RF00604,SNORD88	4	chr7 51505822 - 51505921 UCSC	1	1	99	reads	graphics	-
mmu-mir-150 [Source:	13	chr7 52377132 - 52377155 UCSC	1	1	23	reads	graphics	-
RF00211,SNORD35	25	chr7 52381750 - 52381805 UCSC	-1	-1	55	reads	graphics	-
RF00133,snoZ195	4	chr7 52382226 - 52382315 UCSC	-1	-1	89	reads	graphics	-
RF00133,snoZ195	6	chr7 52382746 - 52382832 UCSC	-1	-1	86	reads	graphics	-
BLAST:hsa-mir-1259MI	9	chr7 59319620 - 59319643 UCSC	-1		23	reads	graphics	-
RF00105,SNORD115	16	chr7 66599436 - 66599473 UCSC	-1	-1	37	reads	graphics	-
RF00105,SNORD115	3	chr7 66602704 - 66602754 UCSC	-1	-1	50	reads	graphics	-
RF00105,SNORD115	126	chr7 66603073 - 66603111 UCSC	-1	-1	38	reads	graphics	-
RF00105,SNORD115	4	chr7 66604901 - 66604983 UCSC	-1	-1	82	reads	graphics	-
RF00105,SNORD115	63	chr7 66606773 - 66606859 UCSC	-1	-1	86	reads	graphics	-
RF00105,SNORD115	564	chr7 66608639 - 66608733 UCSC	-1	-1	94	reads	graphics	-
RF00105,SNORD115	5	chr7 66619853 - 66619944 UCSC	-1	-1	91	reads	graphics	-
RF00105,SNORD115	10	chr7 66623628 - 66623683 UCSC	-1	-1	55	reads	graphics	-
RF00105,SNORD115	79	chr7 66625471 - 66625554 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	3	chr7 66627340 - 66627367 UCSC	-1	-1	27	reads	graphics	-
RF00105,SNORD115	32	chr7 66629208 - 66629291 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	36	chr7 66634815 - 66634898 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	12	chr7 66645188 - 66645267 UCSC	-1	-1	79	reads	graphics	-
RF00105,SNORD115	11	chr7 66647054 - 66647137 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	49	chr7 66648925 - 66649008 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	57	chr7 66660695 - 66660777 UCSC	-1	-1	82	reads	graphics	-
RF00105,SNORD115	10	chr7 66662558 - 66662644 UCSC	-1	-1	86	reads	graphics	-
RF00105,SNORD115	8	chr7 66664455 - 66664511 UCSC	-1	-1	56	reads	graphics	-
RF00105,SNORD115	15	chr7 66666325 - 66666380 UCSC	-1	-1	55	reads	graphics	-
RF00105,SNORD115	12	chr7 66669457 - 66669538 UCSC	-1	-1	81	reads	graphics	-
RF00105,SNORD115	56	chr7 66670947 - 66671037 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	18	chr7 66674687 - 66674770 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	24	chr7 66678419 - 66678502 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	7	chr7 66680294 - 66680371 UCSC	-1	-1	77	reads	graphics	-
RF00105,SNORD115	250	chr7 66682152 - 66682242 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	89	chr7 66691507 - 66691595 UCSC	-1	-1	88	reads	graphics	-
RF00105,SNORD115	17	chr7 66704615 - 66704690 UCSC	-1	-1	75	reads	graphics	-
RF00105,SNORD115	12	chr7 66708347 - 66708430 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	6	chr7 66725391 - 66725481 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	578	chr7 66730978 - 66731073 UCSC	-1	-1	95	reads	graphics	-
RF00105,SNORD115	24	chr7 66734711 - 66734793 UCSC	-1	-1	82	reads	graphics	-
RF00105,SNORD115	15	chr7 66736576 - 66736666 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	106	chr7 66740312 - 66740395 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	6	chr7 66745908 - 66746008 UCSC	-1	-1	100	reads	graphics	-
RF00105,SNORD115	8	chr7 66751561 - 66751606 UCSC	-1	-1	45	reads	graphics	-
RF00105,SNORD115	32	chr7 66762562 - 66762645 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	52	chr7 66766298 - 66766384 UCSC	-1	-1	86	reads	graphics	-
RF00105,SNORD115	8	chr7 66768153 - 66768242 UCSC	-1	-1	89	reads	graphics	-
RF00105,SNORD115	15	chr7 66779393 - 66779474 UCSC	-1	-1	81	reads	graphics	-
RF00105,SNORD115	7	chr7 66781265 - 66781346 UCSC	-1	-1	81	reads	graphics	-
RF00105,SNORD115	67	chr7 66796234 - 66796317 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	6	chr7 66809337 - 66809428 UCSC	-1	-1	91	reads	graphics	-
RF00105,SNORD115	1243	chr7 66814960 - 66815050 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	10	chr7 66826193 - 66826284 UCSC	-1	-1	91	reads	graphics	-
RF00105,SNORD115	74	chr7 66829938 - 66830026 UCSC	-1	-1	88	reads	graphics	-
RF00105,SNORD115	3	chr7 66831813 - 66831896 UCSC	-1	-1	83	reads	graphics	-
RF00105,SNORD115	19	chr7 66861755 - 66861836 UCSC	-1	-1	81	reads	graphics	-
RF00105,SNORD115	13	chr7 66872969 - 66873059 UCSC	-1	-1	90	reads	graphics	-
RF00105,SNORD115	3	chr7 66874442 - 66874464 UCSC	-1	-1	22	reads	graphics	-
RF00108,SNORD116	974	chr7 66928840 - 66928925 UCSC	-1	-1	85	reads	graphics	-
RF00108,SNORD116	4	chr7 66931357 - 66931452 UCSC	-1	-1	95	reads	graphics	-
RF00108,SNORD116	195	chr7 66933860 - 66933972 UCSC	-1	-1	112	reads	graphics	-
RF00108,SNORD116	82	chr7 67009119 - 67009219 UCSC	-1	-1	100	reads	graphics	-
RF00108,SNORD116	264	chr7 67042041 - 67042140 UCSC	-1	-1	99	reads	graphics	-
RF00108,SNORD116	6	chr7 67049656 - 67049733 UCSC	-1	-1	77	reads	graphics	-
RF00570,SNORD64	4	chr7 67123689 - 67123758 UCSC	-1	-1	69	reads	graphics	-
BLAST:RF00825;mir-34	4	chr7 68828013 - 68828034 UCSC	-1		21	reads	graphics	-
mmu-mir-9-3 [Source:	83	chr7 86650164 - 86650197 UCSC	1	1	33	reads	graphics	-
RF00067,SNORD15	3	chr7 106628076 - 106628218 UCSC	-1	-1	142	reads	graphics	-
RF00067,SNORD15	3	chr7 106631287 - 106631442 UCSC	-1	-1	155	reads	graphics	-
mmu-mir-139 [Source:	3	chr7 108623932 - 108623957 UCSC	1	1	25	reads	graphics	-
RF00334,SNORA3	15	chr7 116663634 - 116663775 UCSC	1	1	141	reads	graphics	-
RF00430,SNORA54	34	chr7 150717290 - 150717430 UCSC	-1	-1	140	reads	graphics	-
BLAST:RF00015;U4; 3e	29	chr7 152100375 - 152100533 UCSC	1		158	reads	graphics	-
BLAST:gnl\|combinedli	14	chr8 15519901 - 15519942 UCSC	1		41	reads	graphics	-
mmu-mir-23a [Source:	283	chr8 86732460 - 86732493 UCSC	1	1	33	reads	graphics	-
RF00588,SNORD41	3	chr8 87574107 - 87574130 UCSC	1	1	23	reads	graphics	-
mmu-mir-138-2 [Sourc	4	chr8 96848212 - 96848236 UCSC	1	1	24	reads	graphics	-
RF00404,SNORA46	12	chr8 98269947 - 98270097 UCSC	-1	-1	150	reads	graphics	-
mmu-mir-328 [Source:	3	chr8 107832276 - 107832300 UCSC	-1	-1	24	reads	graphics	-
RF00576,SNORD71	17	chr8 112363200 - 112363251 UCSC	1	1	51	reads	graphics	-
RF00611,SNORD111	4	chr8 113362427 - 113362511 UCSC	-1	-1	84	reads	graphics	-
RF00611,SNORD111	3	chr8 113366280 - 113366353 UCSC	-1	-1	73	reads	graphics	-
RF00324,snoMBII-202	178	chr8 125626930 - 125627020 UCSC	1	1	90	reads	graphics	-
RF00397,SNORA14	3	chr8 129468741 - 129468881 UCSC	-0.33	-1	140	reads	graphics	-
BLAST:gnl\|Fantom3\|FT	29	chr9 3258823 - 3258895 UCSC	-1		72	reads	graphics	-
RF00425,SNORA18	10	chr9 15118245 - 15118369 UCSC	1	1	124	reads	graphics	-
RF00584,SNORD105	24	chr9 20693935 - 20694009 UCSC	1	1	74	reads	graphics	-
RF00016,SNORD14	6	chr9 40611666 - 40611758 UCSC	1	1	92	reads	graphics	-
RF00016,SNORD14	13	chr9 40612078 - 40612177 UCSC	1	1	99	reads	graphics	-
RF00016,SNORD14	8	chr9 40612831 - 40612935 UCSC	1	1	104	reads	graphics	-
mmu-mir-34b [Source:	3	chr9 50911676 - 50911700 UCSC	-1	-1	24	reads	graphics	-
mmu-mir-190 [Source:	3	chr9 67084504 - 67084528 UCSC	-1	-1	24	reads	graphics	-
RF00100,7SK	19	chr9 78023095 - 78023319 UCSC	-1	-1	224	reads	graphics	-
mmu-let-7g [Source:m	4	chr9 106081177 - 106081201 UCSC	1	1	24	reads	graphics	-
mmu-mir-191 [Source:	57	chr9 108470656 - 108470683 UCSC	1	1	27	reads	graphics	-
piRNA-ncRNA.org,FR12	4	chr9 110183748 - 110183807 UCSC	1	1	59	reads	graphics	-
mmu-mir-128-2 [Sourc	6	chr9 112021142 - 112021168 UCSC	-1	-1	26	reads	graphics	-
piRNA-ncRNA.org,FR38	5	chr9 118584043 - 118584177 UCSC	-1	-1	134	reads	graphics	-
mmu-mir-26a-1 [Sourc	10	chr9 118940927 - 118940951 UCSC	1	1	24	reads	graphics	-
mm686 protein:SAM an intron (1867)	7	chr10 8498357 - 8498451 UCSC	1	-1	94	reads	graphics	-
RF00003,U1	7	chr10 12083207 - 12083239 UCSC	1	1	32	reads	graphics	-
tRNA-Leu-TAA,TRNA131	69	chr10 12642377 - 12642453 UCSC	-1	-1	76	reads	graphics	-
RF00026,U6	3	chr10 13608347 - 13608369 UCSC	-1	-1	22	reads	graphics	-
BLAST:RF00287;SNORD4	12	chr10 16835483 - 16835504 UCSC	-1		21	reads	graphics	-
RF00026,U6	44	chr10 19502660 - 19502784 UCSC	1	1	124	reads	graphics	-
RF00609,SNORD100	5	chr10 23505571 - 23505626 UCSC	-1	-1	55	reads	graphics	-
RF00186,SNORD101	161	chr10 23506267 - 23506348 UCSC	-1	-1	81	reads	graphics	-
RF00026,U6	9	chr10 24613842 - 24613902 UCSC	1	1	60	reads	graphics	-
RF00026,U6	5	chr10 30213770 - 30213866 UCSC	1	1	96	reads	graphics	-
tRNA-Glu-CTC,TRNA81	489	chr10 30530941 - 30531022 UCSC	1	1	81	reads	graphics	-
RF00026,U6	4	chr10 30662178 - 30662228 UCSC	-1	-1	50	reads	graphics	-
tRNA-Ser-TGA,TRNA109	103	chr10 62892249 - 62892305 UCSC	-1	-1	56	reads	graphics	-
RF00026,U6	4	chr10 70344867 - 70344966 UCSC	1	1	99	reads	graphics	-
mm700 protein:protoc intron (49379)	6	chr10 73459274 - 73459300 UCSC	1	1	26	reads	graphics	-
RF00001,5S_rRNA	7	chr10 77776976 - 77777036 UCSC	1	1	60	reads	graphics	-
RF00440,SNORD37	75	chr10 80641693 - 80641767 UCSC	1	1	74	reads	graphics	-
RF00563,SNORA53	5	chr10 90581055 - 90581089 UCSC	-1	-1	34	reads	graphics	-
tRNA-Asp-GTC,TRNA856	3	chr10 90644889 - 90644914 UCSC	-1	-1	25	reads	graphics	-
mmu-mir-135a-2 [Sour	9	chr10 91534884 - 91534908 UCSC	-1	-1	24	reads	graphics	-
mm713 protein:transm intron (5323)	16	chr10 104675295 - 104675323 UCSC	1	-1	28	reads	graphics	-
mmu-let-7i [Source:m	4	chr10 122422753 - 122422775 UCSC	-1	-1	22	reads	graphics	-
mmu-mir-26a-2 [Sourc	118	chr10 126432599 - 126432622 UCSC	1	1	23	reads	graphics	-
RF00273,SNORD59	9	chr10 127521200 - 127521278 UCSC	1	1	78	reads	graphics	-
RF00026,U6	5	chr11 16632596 - 16632663 UCSC	-1	-1	67	reads	graphics	-
mm727 protein:WD rep intron (802)	4	chr11 17121359 - 17121399 UCSC	1	1	40	reads	graphics	LSU-rRNA_Hsa
mm728 protein:WD rep intron (682)	7	chr11 17121452 - 17121519 UCSC	1	1	67	reads	graphics	-
mmu-mir-216b [Source	6	chr11 28646204 - 28646230 UCSC	1	1	26	reads	graphics	-
mmu-mir-216a [Source	4	chr11 28657018 - 28657041 UCSC	1	1	23	reads	graphics	-
mm731 protein:Kv cha intron (88115)	5	chr11 33654957 - 33655016 UCSC	-1	-1	59	reads	graphics	-
mmu-mir-218-2 [Sourc	8	chr11 35430342 - 35430366 UCSC	1	1	24	reads	graphics	-
mmu-mir-103-1 [Sourc	236	chr11 35595947 - 35595977 UCSC	1	1	30	reads	graphics	-
RF00055,SNORD96	65	chr11 48615536 - 48615623 UCSC	1	1	87	reads	graphics	-
RF00189,SNORD95	3	chr11 48616673 - 48616707 UCSC	1	1	34	reads	graphics	-
tRNA-Pro-TGG,TRNA207	15	chr11 48669778 - 48669841 UCSC	1	1	63	reads	graphics	-
tRNA-Val-AAC,TRNA208	7	chr11 48670139 - 48670169 UCSC	1	1	30	reads	graphics	-
mmu-mir-340 [Source:	88	chr11 49883221 - 49883249 UCSC	1	1	28	reads	graphics	-
RF00554,SNORA48	3	chr11 51551279 - 51551333 UCSC	-1	-1	54	reads	graphics	-
tRNA-Trp-CCA,TRNA188	16	chr11 61221395 - 61221489 UCSC	-1	-1	94	reads	graphics	-
RF00277,SNORD49	2069	chr11 62416569 - 62416669 UCSC	1	1	100	reads	graphics	-
RF00277,SNORD49	75	chr11 62416951 - 62416997 UCSC	1	1	46	reads	graphics	-
RF00571,SNORD65	8	chr11 62418015 - 62418104 UCSC	1	1	89	reads	graphics	-
tRNA-Pro-CGG,TRNA396	4	chr11 68853887 - 68853941 UCSC	1	1	54	reads	graphics	-
tRNA-Asp-GTC,TRNA397	85	chr11 68854486 - 68854551 UCSC	1	1	65	reads	graphics	-
tRNA-Gly-TCC,TRNA182	15	chr11 68854792 - 68854851 UCSC	-1	-1	59	reads	graphics	-
RF00096,U8	4	chr11 68886976 - 68887003 UCSC	1	1	27	reads	graphics	-
tRNA-Ser-CGA,TRNA400	23	chr11 68924416 - 68924471 UCSC	1	1	55	reads	graphics	-
RF00554,SNORA48	3	chr11 69483132 - 69483281 UCSC	-1	-1	149	reads	graphics	-
mmu-mir-497 [Source:	11	chr11 70048232 - 70048259 UCSC	1	1	27	reads	graphics	-
mmu-mir-195 [Source:	11	chr11 70048564 - 70048601 UCSC	1	1	37	reads	graphics	-
RF00001,5S_rRNA	32	chr11 74133294 - 74133421 UCSC	1	1	127	reads	graphics	-
mmu-mir-212 [Source:	14	chr11 74986905 - 74986932 UCSC	1	1	27	reads	graphics	-
mmu-mir-22 [Source:m	520	chr11 75277274 - 75277307 UCSC	1	1	33	reads	graphics	-
RF00150,SNORD42	10	chr11 77994790 - 77994864 UCSC	-1	-1	74	reads	graphics	-
RF00004,U2	215	chr11 83085035 - 83085196 UCSC	1	1	161	reads	graphics	-
RF00288,snoZ30	5	chr11 83107800 - 83107878 UCSC	1	1	78	reads	graphics	-
mmu-mir-21 [Source:m	43	chr11 86397619 - 86397643 UCSC	-1	-1	24	reads	graphics	-
mm752 protein:protei intron (15575)	3	chr11 87156228 - 87156377 UCSC	1	-1	149	reads	graphics	-
RF00003,U1	8	chr11 87236369 - 87236541 UCSC	1	1	172	reads	graphics	-
RF00003,U1	3014	chr11 87240202 - 87240402 UCSC	1	1	200	reads	graphics	-
RF00012,U3	5	chr11 87262204 - 87262352 UCSC	1	1	148	reads	graphics	-
RF00012,U3	17	chr11 87275814 - 87276005 UCSC	1	1	191	reads	graphics	-
RF00004,U2	5	chr11 95944983 - 95945019 UCSC	-1	-1	36	reads	graphics	-
mmu-mir-152 [Source:	14	chr11 96711753 - 96711777 UCSC	1	1	24	reads	graphics	-
RF00412,SNORA21	3	chr11 97642950 - 97643007 UCSC	-1	-1	57	reads	graphics	-
tRNA-Cys-GCA,TRNA791	10	chr11 97658386 - 97658431 UCSC	1	1	45	reads	graphics	-
RF00026,U6	10	chr11 98807807 - 98807876 UCSC	1	1	69	reads	graphics	-
RF00004,U2	10	chr11 101466318 - 101466355 UCSC	1	1	37	reads	graphics	-
RF00004,U2	97	chr11 101503080 - 101503267 UCSC	1	1	187	reads	graphics	-
RF00004,U2	8	chr11 101507052 - 101507085 UCSC	-1	-1	33	reads	graphics	-
RF00289,SNORND104	201	chr11 106362302 - 106362392 UCSC	1	1	90	reads	graphics	-
tRNA-Arg-CCG,TRNA945	4	chr11 106874180 - 106874235 UCSC	1	1	55	reads	graphics	-
tRNA-Arg-CCT,TRNA102	87	chr11 115274294 - 115274372 UCSC	1	1	78	reads	graphics	-
tRNA-Arg-CCT,TRNA123	4	chr11 115274618 - 115274662 UCSC	-1	-1	44	reads	graphics	-
tRNA-Arg-TCG,TRNA102	103	chr11 115275093 - 115275155 UCSC	1	1	62	reads	graphics	-
mmu-mir-338 [Source:	11	chr11 119876090 - 119876117 UCSC	-1	-1	27	reads	graphics	-
mmu-mir-338 [Source:	4	chr11 119876130 - 119876151 UCSC	-1	-1	21	reads	graphics	-
RF00026,U6	22	chr12 4765402 - 4765468 UCSC	1	1	66	reads	graphics	-
RF00026,U6	8	chr12 14513458 - 14513504 UCSC	1	1	46	reads	graphics	-
RF00026,U6	4	chr12 53704796 - 53704881 UCSC	1	1	85	reads	graphics	-
RF00026,U6	4	chr12 53705465 - 53705512 UCSC	-1	-1	47	reads	graphics	-
RF00001,5S_rRNA	6	chr12 54147690 - 54147766 UCSC	-1	-1	76	reads	graphics	-
RF00003,U1	83	chr12 55797769 - 55797942 UCSC	1	1	173	reads	graphics	-
RF00003,U1	4	chr12 55811295 - 55811476 UCSC	1	1	181	reads	graphics	-
RF00003,U1	72	chr12 55815201 - 55815399 UCSC	1	1	198	reads	graphics	-
RF00003,U1	6	chr12 55830589 - 55830768 UCSC	1	1	179	reads	graphics	-
Infernal:snoReport:H intron (35)	10	chr12 56888489 - 56888637 UCSC	-1	-1	148	reads	graphics	-
RF00017,SRP_euk_arch	131	chr12 70260282 - 70260596 UCSC	1	1	314	reads	graphics	-
RF00017,SRP_euk_arch	22	chr12 70462150 - 70462270 UCSC	1	-1	120	reads	graphics	-
RF00100,7SK	38	chr12 71031891 - 71032123 UCSC	1	1	232	reads	graphics	-
mm785 protein:Six6 o intron (1454)	3	chr12 73997491 - 73997539 UCSC	1	-1	48	reads	graphics	-
mm789 protein:RIKEN intron (816)	3	chr12 79821437 - 79821461 UCSC	1	1	24	reads	graphics	-
RF00418,SNORA58	5	chr12 88778631 - 88778767 UCSC	-1	-1	136	reads	graphics	-
RF00001,5S_rRNA	11	chr12 92040096 - 92040158 UCSC	1	1	62	reads	graphics	-
mmu-mir-345 [Source:	4	chr12 110075198 - 110075224 UCSC	1	1	26	reads	graphics	-
mmu-mir-127 [Source:	12	chr12 110831064 - 110831091 UCSC	1	1	27	reads	graphics	-
mmu-mir-127 [Source:	5	chr12 110831098 - 110831119 UCSC	1	1	21	reads	graphics	-
mmu-mir-136 [Source:	17	chr12 110833539 - 110833566 UCSC	1	1	27	reads	graphics	-
mmu-mir-136 [Source:	8	chr12 110833575 - 110833602 UCSC	1	1	27	reads	graphics	-
sno-ncRNA.org,FR2913	5	chr12 110874224 - 110874305 UCSC	1	1	81	reads	graphics	-
RF00181,SNORD113	597	chr12 110887827 - 110887913 UCSC	1	1	86	reads	graphics	-
sno-ncRNA.org,FR1015	17	chr12 110888878 - 110888964 UCSC	1	1	86	reads	graphics	-
RF00181,SNORD113	7	chr12 110892839 - 110892913 UCSC	1	1	74	reads	graphics	-
RF00181,SNORD113	3	chr12 110894557 - 110894629 UCSC	1	1	72	reads	graphics	-
RF00181,SNORD113	10	chr12 110919011 - 110919075 UCSC	1	1	64	reads	graphics	-
RF00181,SNORD113	4	chr12 110920596 - 110920650 UCSC	1	1	54	reads	graphics	-
RF00181,SNORD113	8	chr12 110923174 - 110923246 UCSC	1	1	72	reads	graphics	-
RF00181,SNORD113	5	chr12 110925011 - 110925073 UCSC	1	1	62	reads	graphics	-
mmu-mir-411 [Source:	11	chr12 110948399 - 110948423 UCSC	1	1	24	reads	graphics	-
mmu-mir-300 [Source:	3	chr12 110962573 - 110962596 UCSC	1	1	23	reads	graphics	-
mmu-mir-381 [Source:	5	chr12 110965080 - 110965103 UCSC	1	1	23	reads	graphics	-
mmu-mir-382 [Source:	4	chr12 110971991 - 110972018 UCSC	1	1	27	reads	graphics	-
mmu-mir-382 [Source:	3	chr12 110972027 - 110972050 UCSC	1	1	23	reads	graphics	-
mmu-mir-668 [Source:	17	chr12 110972982 - 110973010 UCSC	1	1	28	reads	graphics	-
mmu-mir-485 [Source:	15	chr12 110973118 - 110973149 UCSC	1	1	31	reads	graphics	-
mmu-mir-154 [Source:	5	chr12 110976648 - 110976673 UCSC	1	1	25	reads	graphics	-
mmu-mir-496 [Source:	9	chr12 110977377 - 110977396 UCSC	1	1	19	reads	graphics	-
mmu-mir-541 [Source:	64	chr12 110980632 - 110980662 UCSC	1	1	30	reads	graphics	-
mmu-mir-369 [Source:	3	chr12 110981641 - 110981664 UCSC	1	1	23	reads	graphics	-
mmu-mir-369 [Source:	4	chr12 110981675 - 110981700 UCSC	1	1	25	reads	graphics	-
RF00400,SNORA28	4	chr12 112779148 - 112779288 UCSC	1	1	140	reads	graphics	-
mmu-mir-153 [Source:	53	chr12 118489333 - 118489363 UCSC	1	1	30	reads	graphics	-
piRNA-ncRNA.org,FR12	244	chr13 9833551 - 9833731 UCSC	-0.99	-1	180	reads	graphics	-
tRNA-Glu-CTC,TRNA100	3	chr13 21252692 - 21252726 UCSC	-1	-1	34	reads	graphics	-
tRNA-Met-CAT,TRNA61	5	chr13 21259473 - 21259542 UCSC	1	1	69	reads	graphics	-
tRNA-Lys-TTT,TRNA100	16	chr13 21259940 - 21260016 UCSC	-1	-1	76	reads	graphics	-
tRNA-Leu-AAG,TRNA62	7	chr13 21261905 - 21261976 UCSC	1	1	71	reads	graphics	-
tRNA-Leu-AAG,TRNA63	4	chr13 21262114 - 21262143 UCSC	1	1	29	reads	graphics	-
tRNA-Leu-CAA,TRNA998	4	chr13 21264763 - 21264811 UCSC	-1	-1	48	reads	graphics	-
tRNA-Leu-CAA,TRNA65	3	chr13 21292073 - 21292116 UCSC	1	1	43	reads	graphics	-
tRNA-Met-CAT,TRNA82	10	chr13 21998980 - 21999020 UCSC	1	1	40	reads	graphics	-
tRNA-Lys-TTT,TRNA83	25	chr13 21999809 - 21999868 UCSC	1	1	59	reads	graphics	-
tRNA-Asp-GTC,TRNA84	11	chr13 22003178 - 22003207 UCSC	1	1	29	reads	graphics	-
tRNA-Gln-CTG,TRNA87	19	chr13 22012069 - 22012117 UCSC	1	1	48	reads	graphics	-
tRNA-Ser-AGA,TRNA88	5	chr13 22019726 - 22019782 UCSC	1	1	56	reads	graphics	-
tRNA-Ile-TAT,TRNA969	11	chr13 23362344 - 23362389 UCSC	-1	-1	45	reads	graphics	-
tRNA-Val-CAC,TRNA98	10	chr13 23399498 - 23399519 UCSC	1	1	21	reads	graphics	-
tRNA-Lys-CTT,TRNA103	25	chr13 23528205 - 23528267 UCSC	1	1	62	reads	graphics	-
tRNA-Leu-CAG,TRNA952	138	chr13 23545301 - 23545384 UCSC	-1	-1	83	reads	graphics	-
tRNA-Glu-TTC,TRNA105	12	chr13 23555404 - 23555475 UCSC	1	1	71	reads	graphics	-
tRNA-Trp-CCA,TRNA109	4	chr13 23598388 - 23598430 UCSC	1	1	42	reads	graphics	-
tRNA-Gly-GCC,TRNA110	25	chr13 23609072 - 23609130 UCSC	1	1	58	reads	graphics	-
tRNA-Ser-GCT,TRNA115	10	chr13 23613739 - 23613813 UCSC	1	1	74	reads	graphics	-
piRNA-ncRNA.org,FR32	3	chr13 44965299 - 44965349 UCSC	-1	-1	50	reads	graphics	-
piRNA-ncRNA.org,FR19	3	chr13 45909960 - 45910029 UCSC	1	1	69	reads	graphics	-
RF00431,SNORA55	3	chr13 46862887 - 46862968 UCSC	-1	-1	81	reads	graphics	-
mmu-let-7d [Source:m	71	chr13 48631443 - 48631469 UCSC	-1	-1	26	reads	graphics	-
mmu-let-7f-1 [Source	42	chr13 48633256 - 48633282 UCSC	-1	-1	26	reads	graphics	-
mmu-let-7a-1 [Source	78	chr13 48633604 - 48633629 UCSC	-1	-1	25	reads	graphics	-
RF00019,Y	31	chr13 51109550 - 51109577 UCSC	1	1	27	reads	graphics	-
mmu-mir-7a-1 [Source	11	chr13 58494197 - 58494224 UCSC	-1	-1	27	reads	graphics	-
mmu-mir-23b [Source:	1912	chr13 63401835 - 63401871 UCSC	1	1	36	reads	graphics	-
mmu-mir-27b [Source:	5	chr13 63402026 - 63402048 UCSC	1	1	22	reads	graphics	-
mmu-mir-27b [Source:	8	chr13 63402068 - 63402091 UCSC	1	1	23	reads	graphics	-
RF00406,SNORA42	5	chr13 75905594 - 75905648 UCSC	1	1	54	reads	graphics	-
mm826 protein:multip intron (979)	3	chr13 76897397 - 76897421 UCSC	1	1	24	reads	graphics	-
RF00026,U6	28	chr13 79594246 - 79594343 UCSC	1	1	97	reads	graphics	-
mm296	9	chr13 82893594 - 82893621 UCSC	-1		27	reads	graphics	L1_Mus3
mmu-mir-9-2 [Source:	1120	chr13 83878424 - 83878453 UCSC	1	1	29	reads	graphics	-
mmu-mir-9-2 [Source:	763	chr13 83878459 - 83878497 UCSC	0.98	1	38	reads	graphics	-
RF00341,snoZ39	99	chr13 86184586 - 86184652 UCSC	-1	-1	66	reads	graphics	-
mmu-mir-1940 [Source	16	chr13 96100553 - 96100700 UCSC	1	1	147	reads	graphics	-
RF00001,5S_rRNA	19	chr13 104186282 - 104186371 UCSC	1	1	89	reads	graphics	-
piRNA-ncRNA.org,FR09	6	chr13 113368363 - 113368468 UCSC	-1	-1	105	reads	graphics	-
piRNA-ncRNA.org,FR05	4	chr13 113368887 - 113368928 UCSC	-1	-1	41	reads	graphics	-
piRNA-ncRNA.org,FR02	7	chr14 20110675 - 20110772 UCSC	1	1	97	reads	graphics	-
RF00007,U12	40	chr14 22631933 - 22632082 UCSC	1	1	149	reads	graphics	-
RF00026,U6	5	chr14 42060991 - 42061085 UCSC	1	1	94	reads	graphics	-
mm854 protein:M-phas intron (516)	3	chr14 57312932 - 57313004 UCSC	-1	1	72	reads	graphics	-
mmu-mir-16-1 [Source	230	chr14 62250767 - 62250797 UCSC	-1	-1	30	reads	graphics	-
mmu-mir-15a [Source:	3	chr14 62250909 - 62250933 UCSC	-1	-1	24	reads	graphics	-
mmu-mir-598 [Source:	23	chr14 64346073 - 64346101 UCSC	1	1	28	reads	graphics	-
mmu-mir-124-1 [Sourc	184	chr14 65209545 - 65209572 UCSC	1	1	27	reads	graphics	-
mmu-mir-320 [Source:	20	chr14 70843364 - 70843390 UCSC	1	1	26	reads	graphics	-
RF00026,U6	3	chr14 74167662 - 74167707 UCSC	-1	-1	45	reads	graphics	-
tRNA-Glu-TTC,TRNA347	5	chr14 76552598 - 76552663 UCSC	1	1	65	reads	graphics	-
tRNA-Glu-TTC,TRNA359	30	chr14 79881475 - 79881555 UCSC	1	1	80	reads	graphics	-
RF00020,U5	10	chr14 96844174 - 96844290 UCSC	1	1	116	reads	graphics	-
RF00415,SNORA30	3	chr14 96988046 - 96988177 UCSC	1	1	131	reads	graphics	-
mmu-mir-92a-1 [Sourc	82	chr14 115443698 - 115443723 UCSC	1	1	25	reads	graphics	-
RF00577,SNORD72	3	chr15 5068408 - 5068490 UCSC	1	1	82	reads	graphics	-
piRNA-ncRNA.org,FR32	4	chr15 32171619 - 32171676 UCSC	-1	-1	57	reads	graphics	-
RF00139,SNORA72	7	chr15 34370538 - 34370677 UCSC	-1	-1	139	reads	graphics	-
mm887 protein:CUB an intron (702)	4	chr15 47541164 - 47541191 UCSC	-1	-1	27	reads	graphics	-
tRNA-Met-CAT,TRNA913	6	chr15 57807537 - 57807577 UCSC	-1	-1	40	reads	graphics	-
mm327	3	chr15 62889636 - 62889661 UCSC	-1		25	reads	graphics	Lx7
RF00593,snoU83B	5	chr15 79908928 - 79909018 UCSC	-1	-1	90	reads	graphics	-
RF00007,U12	14	chr15 82980184 - 82980233 UCSC	1	1	49	reads	graphics	-
mmu-let-7c-2 [Source	3	chr15 85537041 - 85537089 UCSC	1	1	48	reads	graphics	-
mmu-let-7b [Source:m	46	chr15 85537755 - 85537781 UCSC	1	1	26	reads	graphics	-
mm340	5	chr15 100694271 - 100694295 UCSC	-1		24	reads	graphics	L1MA8
mmu-mir-185 [Source:	3	chr16 18327530 - 18327552 UCSC	-1	-1	22	reads	graphics	-
mm348	3	chr16 18637304 - 18637328 UCSC	-1		24	reads	graphics	-
RF00572,SNORD66	20	chr16 20684312 - 20684397 UCSC	1	1	85	reads	graphics	-
sno-ncRNA.org,FR2832	204	chr16 23109028 - 23109099 UCSC	1	1	71	reads	graphics	-
sno-ncRNA.org,FR3464	7	chr16 23110829 - 23111007 UCSC	1	1	178	reads	graphics	-
RF00092,SNORA63	6	chr16 23111373 - 23111511 UCSC	1	1	138	reads	graphics	-
BLAST:mmu-mir-9-2MI0	4	chr16 30436576 - 30436602 UCSC	1		26	reads	graphics	-
snRNA-ncRNA.org,FR01	30	chr16 33047677 - 33047786 UCSC	1	1	109	reads	graphics	-
piRNA-ncRNA.org,FR30	7	chr16 35981795 - 35981911 UCSC	-1	-1	116	reads	graphics	-
mm916 protein:bobby intron (8785)	36	chr16 50420186 - 50420239 UCSC	1	-1	53	reads	graphics	-
mmu-let-7c-1 [Source	107	chr16 77599917 - 77599943 UCSC	1	1	26	reads	graphics	-
mmu-mir-125b-2 [Sour	94	chr16 77646524 - 77646549 UCSC	1	1	25	reads	graphics	-
mmu-let-7e [Source:m	6	chr17 17967330 - 17967353 UCSC	1	1	23	reads	graphics	-
mmu-mir-125a [Source	52	chr17 17967781 - 17967808 UCSC	1	1	27	reads	graphics	-
unclass-ncRNA.org,FR	10	chr17 22598898 - 22598929 UCSC	1	1	31	reads	graphics	-
tRNA-Gly-CCC,TRNA113	52	chr17 26012033 - 26012106 UCSC	1	1	73	reads	graphics	-
RF00276,SNORD52	3	chr17 35087894 - 35087963 UCSC	-1	-1	69	reads	graphics	-
RF00282,SNORD48	143	chr17 35088955 - 35089022 UCSC	-1	-1	67	reads	graphics	-
sno-ncRNA.org,FR1456	185	chr17 35089177 - 35089256 UCSC	-1	-1	79	reads	graphics	-
RF00137,SNORD83	13	chr17 35379623 - 35379702 UCSC	1	1	79	reads	graphics	-
RF00137,SNORD83	6	chr17 35384120 - 35384177 UCSC	1	1	57	reads	graphics	-
RF00177,SSU_rRNA_5	93	chr17 39983298 - 39983635 UCSC	0.91	1	337	reads	graphics	-
RF00177,SSU_rRNA_5	18	chr17 39983720 - 39983824 UCSC	1	1	104	reads	graphics	-
RF00177,SSU_rRNA_5	7	chr17 39983881 - 39983937 UCSC	1	1	56	reads	graphics	-
RF00177,SSU_rRNA_5	8	chr17 39983950 - 39984129 UCSC	1	1	179	reads	graphics	-
BLAST:gnl\|PIR\|PIR192	4	chr17 39984416 - 39984493 UCSC	1		77	reads	graphics	-
piRNA-ncRNA.org,FR03	3	chr17 39984500 - 39984558 UCSC	1	1	58	reads	graphics	-
piRNA-ncRNA.org,FR37	65	chr17 39984679 - 39985007 UCSC	0.96	1	328	reads	graphics	-
mm369	4	chr17 42035292 - 42035318 UCSC	-1		26	reads	graphics	-
RF00100,7SK	291	chr17 46540998 - 46541165 UCSC	1	1	167	reads	graphics	-
RF00325,SNORD53	5	chr17 71990924 - 71991004 UCSC	1	1	80	reads	graphics	-
RF00019,Y	18	chr17 76510566 - 76510644 UCSC	-1	-1	78	reads	graphics	-
tRNA-Ile-TAT,TRNA516	10	chr17 84261281 - 84261343 UCSC	1	1	62	reads	graphics	-
RF00019,Y	7	chr18 21460781 - 21460809 UCSC	1	1	28	reads	graphics	-
BLAST:hsa-mir-181b-1	6	chr18 58944848 - 58944874 UCSC	1		26	reads	graphics	-
RF00151,SNORD58	5	chr18 75161109 - 75161181 UCSC	1	1	72	reads	graphics	-
RF00151,SNORD58	48	chr18 75161533 - 75161602 UCSC	1	1	69	reads	graphics	-
piRNA-ncRNA.org,FR12	5	chr18 85867642 - 85867678 UCSC	-1	-1	36	reads	graphics	-
BLAST:dme-mir-125MI0	13	chr18 87124407 - 87124431 UCSC	-1		24	reads	graphics	-
RF00054,SNORD25	6	chr19 8798484 - 8798560 UCSC	1	1	76	reads	graphics	-
RF00087,SNORD26	7	chr19 8798741 - 8798823 UCSC	1	1	82	reads	graphics	-
RF00086,SNORD27	57	chr19 8799021 - 8799101 UCSC	1	1	80	reads	graphics	-
RF00088,SNORD30	33	chr19 8799830 - 8799907 UCSC	1	1	77	reads	graphics	-
RF00089,SNORD31	21	chr19 8800085 - 8800155 UCSC	1	1	70	reads	graphics	-
tRNA-Val-TAC,TRNA109	3	chr19 12086421 - 12086497 UCSC	1	1	76	reads	graphics	-
mm393	3	chr19 14904762 - 14904787 UCSC	-1		25	reads	graphics	L1MA7
mmu-mir-101b [Source	80	chr19 29209828 - 29209856 UCSC	1	1	28	reads	graphics	-
mmu-mir-107 [Source:	4	chr19 34895183 - 34895212 UCSC	-1	-1	29	reads	graphics	-
mm399	16	chr19 41891751 - 41891772 UCSC	-1		21	reads	graphics	-
mmu-mir-362 [Source:	3	chrX 6819106 - 6819131 UCSC	-1	-1	25	reads	graphics	-
RF00004,U2	3	chrX 40607378 - 40607416 UCSC	1	1	38	reads	graphics	-
mmu-mir-322 [Source:	5	chrX 50407443 - 50407466 UCSC	-1	-1	23	reads	graphics	-
mm411	9	chrX 54463220 - 54463243 UCSC	-1		23	reads	graphics	-
mm979 protein:Novel intron (49889)	3	chrX 99192951 - 99192982 UCSC	-1	1	31	reads	graphics	-
mmu-mir-374 [Source:	4	chrX 100768422 - 100768447 UCSC	1	-1	25	reads	graphics	-
mmu-mir-374 [Source:	9	chrX 100768448 - 100768472 UCSC	-1	-1	24	reads	graphics	-
mmu-mir-384 [Source:	52	chrX 102539628 - 102539654 UCSC	-1	-1	26	reads	graphics	-
BLAST:mmu-mir-106bMI	10	chrX 102544987 - 102545015 UCSC	-1		28	reads	graphics	-
tRNA-Arg-CCT,TRNA321	5	chrX 108490857 - 108490906 UCSC	1	1	49	reads	graphics	-
mmu-mir-652 [Source:	4	chrX 139173603 - 139173627 UCSC	1	1	24	reads	graphics	-
RF00001,5S_rRNA	18	chrY 328102 - 328170 UCSC	-1	-1	68	reads	graphics	-
tRNA-Phe,TRNAF	6	chrM 1 - 64 UCSC	1	1	63	reads	graphics	-
Rnr1,s-rRNA	23	chrM 70 - 223 UCSC	1	1	153	reads	graphics	-
Rnr1,s-rRNA	8	chrM 248 - 317 UCSC	1	1	69	reads	graphics	-
Rnr1,s-rRNA	3	chrM 569 - 641 UCSC	1	1	72	reads	graphics	-
tRNA-Val,TRNAV	91	chrM 1025 - 1105 UCSC	1	1	80	reads	graphics	-
Rnr2,16S ribosomal R	11	chrM 1094 - 1149 UCSC	1	1	55	reads	graphics	-
Rnr2,16S ribosomal R	3	chrM 1217 - 1330 UCSC	1	1	113	reads	graphics	-
Rnr2,16S ribosomal R	8	chrM 1733 - 1849 UCSC	1	1	116	reads	graphics	-
Rnr2,16S ribosomal R	17	chrM 1831 - 1925 UCSC	1	1	94	reads	graphics	-
Rnr2,16S ribosomal R	3	chrM 2010 - 2070 UCSC	1	1	60	reads	graphics	-
Rnr2,16S ribosomal R	4	chrM 2169 - 2232 UCSC	1	1	63	reads	graphics	-
Rnr2,16S ribosomal R	4	chrM 2630 - 2654 UCSC	1	1	24	reads	graphics	-
tRNA-Leu,TRNAL1	41	chrM 2676 - 2745 UCSC	1	1	69	reads	graphics	-
tRNA-Ile,TRNAI	93	chrM 3705 - 3782 UCSC	1	1	77	reads	graphics	-
tRNA-Ile,TRNAI	48	chrM 3766 - 3845 UCSC	-0.95	1	79	reads	graphics	-
tRNA-Met,TRNAM	16	chrM 3845 - 3879 UCSC	1	1	34	reads	graphics	-
tRNA-Ala,TRNAA	14	chrM 4978 - 5021 UCSC	1	-1	43	reads	graphics	-
tRNA-Ala,TRNAA	36	chrM 5005 - 5086 UCSC	-0.94	-1	81	reads	graphics	-
tRNA-Ala,TRNAA	561	chrM 5081 - 5164 UCSC	-1	-1	83	reads	graphics	-
tRNA-Cys,TRNAC	51	chrM 5182 - 5257 UCSC	-1	-1	75	reads	graphics	-
mm433 protein:mitoch exon (133)	3	chrM 5462 - 5518 UCSC	1	1	56	reads	graphics	-
piRNA-ncRNA.org,FR16	3	chrM 6638 - 6769 UCSC	1	1	131	reads	graphics	-
tRNA-Ser,TRNAS1	48	chrM 6845 - 6938 UCSC	-0.91	-1	93	reads	graphics	-
tRNA-Asp,TRNAD	13	chrM 6942 - 7027 UCSC	1	1	85	reads	graphics	-
tRNA-Lys,TRNAK	19	chrM 7700 - 7775 UCSC	1	1	75	reads	graphics	-
unclass-ncRNA.org,FR	4	chrM 7766 - 7831 UCSC	1	1	65	reads	graphics	-
unclass-ncRNA.org,FR	3	chrM 8412 - 8443 UCSC	1	1	31	reads	graphics	-
infernal:snoZ5 4.496 exon (157)	4	chrM 8765 - 8843 UCSC	1	1	78	reads	graphics	-
tRNA-Gly,TRNAG	68	chrM 9391 - 9467 UCSC	1	1	76	reads	graphics	-
tRNA-Arg,TRNAR	42	chrM 9808 - 9882 UCSC	1	1	74	reads	graphics	-
unclass-ncRNA.org,FR	5	chrM 9876 - 10007 UCSC	1	-1	131	reads	graphics	-
tRNA-His,TRNAH	202	chrM 11543 - 11621 UCSC	1	1	78	reads	graphics	-
tRNA-His,TRNAH	1279	chrM 11610 - 11674 UCSC	1	1	64	reads	graphics	-
tRNA-Leu,TRNAL2	5	chrM 11671 - 11745 UCSC	1	1	74	reads	graphics	-
tRNA-Glu,TRNAE	21	chrM 14066 - 14139 UCSC	-1	-1	73	reads	graphics	-
mm455 protein:mitoch exon (12)	3	chrM 15248 - 15277 UCSC	1	1	29	reads	graphics	-
tRNA-Pro,TRNAP	19	chrM 15352 - 15433 UCSC	-0.15	1	81	reads	graphics	-
mmu-mir-805 [Source:	3	chrM 16143 - 16188 UCSC	-1	-1	45	reads	graphics	-

Mousebrain 454

annotation