Alpha-operon mRNA structure
SS = 100*TP/RP and SP = 100*TP/(TP+FP);
RP = number of
base pairs in
the reference structure;
TP = number of true positive
predicted base
pairs;
FP = number of false positive predicted base pairs;
Compared gives the predicted structure compared to the
reference structure in linked diagram representation.
Base pairs drawn in black are present in both the
predicted structure
and the reference structure (true positives). Red base pairs are only
present in our prediction, but not in the reference (false
positives). And
base pairs which are not contained in the prediction, but are part of
the reference structure (false negatives) are drawn in green.
Pknots
[Rivas and Eddy] was used with default parameters, except wkn =
0.88.
Ilm [Ruan
et al.] and
hxmatch were used with default parameter settings.
Last modified: 2004-09-02 17:03:43 xtina