Structure #169
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr21 |
Strand | - |
Position | 15,807,334 - 15,807,454 |
Number of sequences | 4 |
Organisms | human, dog, mouse, rat |
Mean pairwise identity | 89.54 |
Columns | 120 |
Mean single MFE | -28.23 |
Consensus MFE | -26.23 |
Combinations/base pair | 44 / 35 = 1.26 |
SCI | 0.93 |
z-score | -2.09 |
RNA class probability | 0.974365 |
This structure is part of cluster 63684
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.54 Mean single sequence MFE: -28.23 Consensus MFE: -26.23 Energy contribution: -24.48 Covariance contribution: -1.75 Mean z-score: -2.09 Structure conservation index: 0.93 SVM decision value: 1.73 SVM RNA-class probability: 0.974365 Prediction: RNA ###################################################################### >hg17.chr21/15807454-15807334 AGCAGAAUAUAUGAUGCUUUCAUAAAUAAGUAUUAGUGCAUUAGUCUUGUCCCAGUCCAAGCCAGAUUUUCCUGGCUGCUUAUUUCCCCAGGUGGCCAGAAUAAUACAAUCCCUGAUAU ..(((....(((((.....))))).....((((((........(.((((........)))).)........(((((..(((........)))..)))))..)))))).....))).... ( -26.10) >canFam1.chr31/15350852-15350732 AGCAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUACAUUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUGCUUAUUUCCCCAGGUGGCCAGAAGAAUACAAUUCUUGAUAUG ...(((((.(((((.....)))))...................((.((((((..(((..((((((......))))))((((........)))))))..)))))).)).)))))....... ( -28.10) >mm5.chr16/77189212-77189092 AACAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCUUAGCUAGAUUUUUCUGGCUCCAUAUUUCCCUAGGUGGCCAGAAGAACACAAUCCCUGAUAU .........(((((.....))))).....(((((((.(.(((.((.((((((..(((..(((((((....)))))))((...........)).)))..)))))).))))).)))))))) ( -28.10) >rn3.chr11/15624532-15624412 AACAGAAUAUAUGGUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCAAAGCCAGAUUUUUCUGGCUCUGUAUUUCCCUAGGUGGCCAGGAGAGCACAAUCCCUGAUAU ..(((......((((((.((.(((......))).)).))))))((.((((((..((((.(((((((....)))))))(((........))).))))..)))))).)).....))).... ( -30.60) >consensus AACAGAAUAUAUGAUGCUUUCAUAAAUAAAUAUUAGUGCAUUAGUCUUCUUCCAGCCCAAGCCAGAUUUUCCUGGCUCCUUAUUUCCCCAGGUGGCCAGAAGAACACAAUCCCUGAUAU_ .........(((((.....))))).....(((((((.(.(((.((.((((((..(((..((((((......))))))........((...)).)))..)))))).)))))).))))))). (-26.23 = -24.48 + -1.75)