Structure #25703

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr10
Strand	+
Position	49,624,107 - 49,624,203
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.54
Columns	98
Mean single MFE	-45.14
Consensus MFE	-37.04
Combinations/base pair	39 / 27 = 1.44
SCI	0.82
z-score	-3.22
RNA class probability	0.99894

This structure is part of cluster 11959

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 98
 Columns: 98
 Strand: +
 Mean pairwise identity:  81.54
 Mean single sequence MFE: -45.13
 Consensus MFE: -37.04
 Energy contribution: -36.23
 Covariance contribution:  -0.81
 Mean z-score:  -3.22
 Structure conservation index:   0.82
 SVM decision value:   3.29
 SVM RNA-class probability: 0.998940
 Prediction: RNA

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>hg17.chr10/49624107-49624203
GCUUCACCACAACGGCCGCCAGGUGGCCCAGGAGGUAGCCUCGGUCUCCAGCACUGGGACCUGCCCCUCCGCUACCUGCGGCAGCGGCCUGGGAAA
..(((.(((....((((((((((((((...(((((..((...((((.(((....))))))).)).))))))))))))).....)))))))))))). ( -47.00)
>canFam1.chr2/653-556
GUUUGGCUACAGUGGCUGCCAGGCAGCCCAGGAGAUGGCCUCGGCCACUGAGCACCAGGACCUGCCCCUCCGCCAUCUUUGGCAGCUGCCUGGGAAA
....((((.....)))).(((((((((...((((.((((....))))(((.....))).........))))((((....)))).))))))))).... ( -43.70)
>mm5.chr11/86232630-86232727
GCUUGGCCACAAUGGCCGCCAGGCGGCCAAGAAGAUGGCCUCGGCCAUCCAAUACCAGAACCUGCCCCUUCUCCAUCUUCGGCAGCCGCCUGGGAAA
....((((.....)))).(((((((((......((((((....)))))).............((((..............))))))))))))).... ( -42.94)
>rn3.chr20/41148770-41148868
GCUUGGCCACAAUGGCCGCCAGGCGGCCCAGAAGAUGGCCCCGGGCCAUCCAAUACUAGAACCUGCCCCUCCGCCAUCUUCGGCAGCCGCCUAGGAAA
....((((.....)))).(((((((((((.(((((((((...((((..((........))....))))....)))))))))))..))))))).))... ( -46.90)
>consensus
GCUUGGCCACAAUGGCCGCCAGGCGGCCCAGAAGAUGGCCUCGGCC_AUCCAACACCAGAACCUGCCCCUCCGCCAUCUUCGGCAGCCGCCUGGGAAA
....((((.....)))).(((((((((...(((((((((...(((...((........))....))).....)))))))))....))))))))).... (-37.04 = -36.23 +  -0.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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