Structure #489
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr21 |
Strand | - |
Position | 25,637,739 - 25,637,825 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 75 |
Columns | 92 |
Mean single MFE | -18.16 |
Consensus MFE | -12.08 |
Combinations/base pair | 30 / 21 = 1.43 |
SCI | 0.67 |
z-score | -2.03 |
RNA class probability | 0.976266 |
This structure is part of cluster 63887
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 92 Columns: 92 Strand: + Mean pairwise identity: 75.00 Mean single sequence MFE: -18.16 Consensus MFE: -12.08 Energy contribution: -11.64 Covariance contribution: -0.44 Mean z-score: -2.03 Structure conservation index: 0.67 SVM decision value: 1.77 SVM RNA-class probability: 0.976266 Prediction: RNA ###################################################################### >hg17.chr21/25637825-25637739 GUGGGCAAACCCAUAUUUAAAUCUUAUUUCCCAUCACAUUUGAUAGGAAAGCCUCUCUCUCACAGCUUUUGUCUGCCUGCUUAUGG (..((((.((................(((((.((((....)))).)))))((............))....)).))))..)...... ( -17.40) >mm5.chr16/84910220-84910136 GUGGGCAAACCAAUAUUUAAAUCUUAUUCCCAAUCACAUUUAAUAAGAAAGCCUCUCACAGCUUUUCUGUUUGCCUGCUUAUGG (..(((((((...........(((((((.............)))))))((((........))))....)))))))..)...... ( -18.82) >rn3.chr11/24001136-24001052 GUGGGCAAACCAAUAUUUAAAUCUUAUUUCCCAUCACAUUUAAUAGGGAAGCCUCUCACAGCUUUUCUGUUUGCCUGCUUAUGG (..(((((((......((((((...............)))))).((..((((........))))..)))))))))..)...... ( -20.96) >canFam1.chr31/23915100-23915016 GUGGGCAAACCGAUAUUUAAAUCUUAUUUCCCAUCACAUUUGAUAGGAAAGCCUCUUGCAGCUUUUCUGUCUGCCUGCUUAUGG (..((((....(((......)))..................(((((((((((........)))))))))))))))..)...... ( -23.90) >galGal2.chr1/96200489-96200404 GUGAGUAGCCCACAAUAUAAAUGUUUAUUCACUGUUACUUGUAUAAGAAAACAUCAUGAUUUUAUUAAAAUCUGUUUGACCCUAC (..((((((....((((........))))....))))))..)......(((((....(((((.....))))))))))........ ( -9.70) >consensus GUGGGCAAACCAAUAUUUAAAU_CUUAUUUCCCAUCACAUUUAAUAGGAAAGCCUCUC____ACAGCUUUUCU___GUCUGCCUGCUUAUGG ((((((((((.............((((((.............))))))(((((............)))))......))))))))))...... (-12.08 = -11.64 + -0.44)