Structure #35776

Summary

Genome/Assembly hg17
Chromosome/Contig chr11
Strand -
Position 41,023,855 - 41,023,944
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 85.66
Columns 89
Mean single MFE -27.25
Consensus MFE -19.34
Combinations/base pair 33 / 27 = 1.22
SCI 0.71
z-score -3.19
RNA class probability 0.981906

This structure is part of cluster 17594

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 89
 Columns: 89
 Strand: +
 Mean pairwise identity:  85.66
 Mean single sequence MFE: -27.25
 Consensus MFE: -19.34
 Energy contribution: -19.40
 Covariance contribution:   0.06
 Mean z-score:  -3.19
 Structure conservation index:   0.71
 SVM decision value:   1.90
 SVM RNA-class probability: 0.981906
 Prediction: RNA

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>hg17.chr11/41023944-41023855
ACCCACAGGGUGCUUUUGGACUCACCCUUAUCAAAGUCUCACCUCUCACUGAGAUAGGAAAAUACUUUCUAGAUGGAAGUCAGUACCCU
......((((((((....((((..((...(((...((((((........)))))).(((((....))))).))))).)))))))))))) ( -23.60)
>mm5.chr2/85077705-85077792
ACCCACAGGGUGCUCUUUGAGUCACCCUUUCAAAGGCACACUGCCCACUGAGUGAGGAAAAUAUUUCCAGACGGAAGUCACCACCCU
...((((((((((((...))).)))))).(((..(((.....)))...)))))).((((.....)))).(((....)))........ ( -28.50)
>rn3.chr3/89667456-89667543
ACCCACAGGGUACUCUUUGAGUCACCCUUUCAAAGGCACACUGCCCACUGAGUGAGGAAAAUAUUUCCAGAUGGAAGUCAGCACCCU
.((((((((((((((...)))).))))).(((..(((.....)))...)))))).)).....((((((....))))))......... ( -24.80)
>canFam1.chr18/27526726-27526814
ACCCACAGGGUGCUCUUUGACUCACCUCAUCAAAGGCUCACGUCUCUCUGAGCUAGGAAAAUGCUUUCCAGAUGGAAGUCAGCACCCU
......((((((((....((((....(((((...((((((........)))))).(((((....))))).))))).)))))))))))) ( -32.10)
>consensus
ACCCACAGGGUGCUCUUUGACUCACCCUU_UCAAAGGCACACUGCCCACUGAGUGAGGAAAAUA_UUUCCAGAUGGAAGUCAGCACCCU
......((((((((((((((..........))))))(((((........)))))..(((((....))))).(((....))))))))))) (-19.34 = -19.40 +   0.06) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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