Structure #54416
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | - |
Position | 57,553,726 - 57,553,846 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 81.09 |
Columns | 120 |
Mean single MFE | -38.47 |
Consensus MFE | -24.2 |
Combinations/base pair | 30 / 24 = 1.25 |
SCI | 0.63 |
z-score | -2.51 |
RNA class probability | 0.962321 |
This structure is part of cluster 27659
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.09 Mean single sequence MFE: -38.47 Consensus MFE: -24.20 Energy contribution: -23.07 Covariance contribution: -1.13 Mean z-score: -2.51 Structure conservation index: 0.63 SVM decision value: 1.52 SVM RNA-class probability: 0.962321 Prediction: RNA ###################################################################### >hg17.chr13/57553846-57553726 GUACCAUCUGUGAGAAACUGAGCCUCGCAGACUUUAAAGAACAUAAUCAGCAGCUUAUGGAGUAAAUGCCCCAUAAGCUGCUCUCUGAGUGAGCCCCACCUUGACAUGGCAGUAGAAAGG ......((((((((.........))))))))((((......(((....((((((((((((.((....)).))))))))))))......))).(((............))).....)))). ( -36.00) >mm5.chr14/76754385-76754271 GCACCAUCUGUGAGAAACUGAACCCCAGACAUCAAGACUAUCAGCAGCUUAUGGGCUAAAUGCCACAUAAGCUGCUCUCUGAGUGAGCCCCACCCUGGCAUGACAGUGGGAAAU ...(((.((((((((..(((.....)))...............(((((((((((((.....))).)))))))))))))).......(((.......)))...)))))))..... ( -39.60) >rn3.chr15/66911370-66911256 GCACCAUCUGUGAGAAACUGAACCCCAGAUAUCAAGACUAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGGGCCCCACCCUGGCAUGACAGUGGGAGCC .(((..((.((((....(((.....)))...............((((((((((............)))))))))))))).)))))((((((((..((......))))))).))) ( -36.80) >canFam1.chr22/17163440-17163320 GUACCAUCUGUGAGAAGCCGUGGCUCACAGACACUAAAGAACAUAAUCGGCAGCUUAUGGAGUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCUGGACACGGCAGUGAAAAAG ................((((((((((((..........((......))(((((((((((..((....))..)))))))))))......)))))).((....)).)))))).......... ( -41.50) >consensus GCACCAUCUGUGAGAAACUGAACCCC__AGACAUCAAA____ACAAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUGCUCGCUGAGUGAGCCCCACCCUGACAUGACAGUGGAAAAG .(((..(((((.((..................................(((((((((((............)))))))))))......(((.....))).)).))).))..)))...... (-24.20 = -23.07 + -1.13)