Structure #54421
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | - |
Position | 57,553,766 - 57,553,886 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 82.63 |
Columns | 120 |
Mean single MFE | -31.94 |
Consensus MFE | -20.09 |
Combinations/base pair | 37 / 29 = 1.28 |
SCI | 0.63 |
z-score | -2.2 |
RNA class probability | 0.842209 |
This structure is part of cluster 27659
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 82.63 Mean single sequence MFE: -31.94 Consensus MFE: -20.09 Energy contribution: -20.52 Covariance contribution: 0.44 Mean z-score: -2.20 Structure conservation index: 0.63 SVM decision value: 0.76 SVM RNA-class probability: 0.842209 Prediction: RNA ###################################################################### >hg17.chr13/57553886-57553766 AUGACUGACAAAUCAUGCUCAGAAGUUGUGAGUACAGCAGGUACCAUCUGUGAGAAACUGAGCCUCGCAGACUUUAAAGAACAUAAUCAGCAGCUUAUGGAGUAAAUGCCCCAUAAGCUG ....((((((.....)).))))..((((((.((((.....))))..((((((((.........))))))))..........))))))...((((((((((.((....)).)))))))))) ( -35.70) >mm5.chr14/76754425-76754311 AUGACUGACAAGUCACACUAAGAAGCAGUGAGUACAGCAGGCACCAUCUGUGAGAAACUGAACCCCAGACAUCAAGACUAUCAGCAGCUUAUGGGCUAAAUGCCACAUAAGCUG ....((((..((((.((((.......)))).((...(((((.....)))))......(((.....))))).....)))).))))((((((((((((.....))).))))))))) ( -33.20) >rn3.chr15/66911410-66911296 AUGACUGACAAGUCACACUAAGAAGCAGCGAAUACAGCAGGCACCAUCUGUGAGAAACUGAACCCCAGAUAUCAAGACUAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUG ....((((..((((.(((......((.((.......))..)).......))).....(((.....))).......)))).))))(((((((((............))))))))) ( -25.42) >canFam1.chr22/17163480-17163360 AUGACUGACACGCCAUGCUAAGAAGUUGUGAGUAUAGCAGGUACCAUCUGUGAGAAGCCGUGGCUCACAGACACUAAAGAACAUAAUCGGCAGCUUAUGGAGUAAAUGCCACAUAAGCUG ....((((...(((.(((((..............))))))))....((((((((.........))))))))...............))))(((((((((..((....))..))))))))) ( -33.44) >consensus AUGACUGACAAGUCACACUAAGAAGCAGUGAGUACAGCAGGCACCAUCUGUGAGAAACUGAACCCC__AGACAUCAAA____ACAAUCAGCAGCUUAUGGACUAAAUGCCACAUAAGCUG ....((((...(((.(.....)..((((......)))).)))....((((((((.........))))))))...............))))(((((((((............))))))))) (-20.09 = -20.52 + 0.44)