Structure #54890
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | - |
Position | 64,513,126 - 64,513,242 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 81.21 |
Columns | 120 |
Mean single MFE | -29.17 |
Consensus MFE | -25.4 |
Combinations/base pair | 52 / 36 = 1.44 |
SCI | 0.87 |
z-score | -1.7 |
RNA class probability | 0.854404 |
This structure is part of cluster 27930
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.21 Mean single sequence MFE: -29.17 Consensus MFE: -25.40 Energy contribution: -23.27 Covariance contribution: -2.12 Mean z-score: -1.70 Structure conservation index: 0.87 SVM decision value: 0.80 SVM RNA-class probability: 0.854404 Prediction: RNA ###################################################################### >hg17.chr13/64513242-64513126 CUGGUCUUUUAACUGUCAGCUCGUGGUUGACAAGUUGAAUAAUUGGAGAAUGUGUCUGUUGGCUUAAAAUAGGAUGUUUUCUUUUAUAUGAUUUAGAGGCUGUUUUUCACCUGGAC ..((((((((((((((((((.....)))))).))))))((((..(((((((((.((((((.......))))))))))))))).))))........))))))............... ( -28.30) >mm5.chr14/83461097-83460977 CUGGUCUUUUAACUGUCAGCUCAUGGUUGAUGAGUUGAAUAAUUAGAGAAUGCAUCUGUUGACUUCAGACAGAAUGUUUGAUUUUUUUUUUAUGAUUUGAAACCCAUUUCUUUAUUCAAC .(((..((((((...(((((((((.....)))))))))((((..((((((((((((((((.......))))).))))...)))))))..))))...)))))).))).............. ( -25.90) >rn3.chr15/74265439-74265323 CUGGUCUUUUAACUGUCAGCUCAUGGUUGAUGAGUUGAAUAAUUGGAGAAUGCAUCUGUUGACUUCAGACAGAAUGUUUGUUUUUUUAUGAUUUGAAGCCCAUUUUCCUAUUCAAC ..(((..(((((((((((((.....)))))).)))))))..)))((((((((..((((((.......))))))......(((((..........))))).))))))))........ ( -26.90) >canFam1.chr22/23281805-23281689 CUGGUCUUUUAACUGUCAGCUCGUGGCUGACAAGUUGAAUAAUUGGGGAACGUGUCUGUUGGUUUAAAACAGAAUGUUUUGCUUUAUGUGAUUUGGAGCCUGUUUUUCACCUGGAC (..((..(((((((((((((.....)))))).)))))))..))..).......((((...(((..(((((((........((((((.......)))))))))))))..))).)))) ( -35.60) >consensus CUGGUCUUUUAACUGUCAGCUCAUGGUUGACAAGUUGAAUAAUUGGAGAAUGCAUCUGUUGACUUAAAACAGAAUGUUU____UUUUUUAUAUGAUUUGAAGCCCAUUUUUCAACUCAAC ..(((..(((((((((((((.....)))))).)))))))..)))((((((((..((((((.......))))))...........((((((.......)))))).))))))))........ (-25.40 = -23.27 + -2.12)