Structure #56925
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | + |
Position | 94,774,638 - 94,774,757 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 81.4 |
Columns | 120 |
Mean single MFE | -34.03 |
Consensus MFE | -20.99 |
Combinations/base pair | 33 / 26 = 1.27 |
SCI | 0.62 |
z-score | -2.39 |
RNA class probability | 0.922944 |
This structure is part of cluster 29090
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.40 Mean single sequence MFE: -34.03 Consensus MFE: -20.99 Energy contribution: -19.55 Covariance contribution: -1.44 Mean z-score: -2.39 Structure conservation index: 0.62 SVM decision value: 1.15 SVM RNA-class probability: 0.922944 Prediction: RNA ###################################################################### >hg17.chr13/94774638-94774757 CACUCAGGGCCUUAUCCUGCCAUUGAGCCUCUCAAUGAUAUCAGCAGGAUGUGGCCCGAAGGUUUUUCCUCCCCUGGUUUCCCCAAACAGAAAAUGCUGGCCUUUGUUUAGACAGUACU .(((..(((((.(((((((((((((((...)))))))......)))))))).)))))((((((...........(((.....)))..(((......)))))))))........)))... ( -39.30) >mm5.chr14/111040398-111040516 CACUCAGAGCCUUAUCCUGCCUUUGAGCCUCCUAGGAUAUCAACAGGAUGCGGCCUGGAUAUUUUCCUCCCCUGACUUCCUAAAACACAAAAUGCAGUCUUUUGUCUAGGCAGCACAU ...((((.(((.(((((((...((((.((.....))...))))))))))).)))..(((.....)))....)))).................(((.((((.......)))).)))... ( -30.10) >rn3.chr15/103640440-103640558 CACUCAGAGCCUUAUCCUGCCUUUGAGCCUCCUAGGAUAUCAACAGGAUAUGGCCUGGAUAUUUCCCUCCCCUGGCUUCCUAAGACACAAAAUGCGGUCUUUUGUCUGGGCAGCACGU ...((((.(((.(((((((...((((.((.....))...))))))))))).)))))))........((.(((.(((.....(((((.(.......))))))..))).))).))..... ( -35.00) >canFam1.chr22/15237987-15237869 CACUCAGGGCCUUAUCCUGCUAUUGAGUCUCCUAGGGUAUCAGCAGGAUAUGGCCCCAAGGAUUUUCCUCUCCCGGUUUCCCCAAACAGAAAAUGCCAUCCUUUGUCUAAACAGUACU .(((..(((((.(((((((((...((..((.....))..))))))))))).)))))...((((((((.......((....))......)))))).))...............)))... ( -31.72) >consensus CACUCAGAGCCUUAUCCUGCCAUUGAGCCUCCUAG_GAUAUCAACAGGAUAUGGCCCGAAGA_UUUUCCUCCCCUGGCUUCCCAAAACACAAAAUGCAGUCCUUUGUCUAGACAGCAC_U ......(((((.(((((((...((((...((.....))..))))))))))).)))))...((.....((......)).....))...................((((....))))..... (-20.99 = -19.55 + -1.44)