Structure #56926
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | - |
Position | 94,774,638 - 94,774,757 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 81.4 |
Columns | 120 |
Mean single MFE | -40.23 |
Consensus MFE | -28.76 |
Combinations/base pair | 45 / 33 = 1.36 |
SCI | 0.72 |
z-score | -2.32 |
RNA class probability | 0.965953 |
This structure is part of cluster 29090
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.40 Mean single sequence MFE: -40.23 Consensus MFE: -28.76 Energy contribution: -28.45 Covariance contribution: -0.31 Mean z-score: -2.32 Structure conservation index: 0.72 SVM decision value: 1.59 SVM RNA-class probability: 0.965953 Prediction: RNA ###################################################################### >hg17.chr13/94774757-94774638 AGUACUGUCUAAACAAAGGCCAGCAUUUUCUGUUUGGGGAAACCAGGGGAGGAAAAACCUUCGGGCCACAUCCUGCUGAUAUCAUUGAGAGGCUCAAUGGCAGGAUAAGGCCCUGAGUG .((...((((......))))..)).((((((.((..((....))..)).))))))...(((.(((((..(((((((......(((((((...))))))))))))))..))))).))).. ( -43.40) >mm5.chr14/111040516-111040398 AUGUGCUGCCUAGACAAAAGACUGCAUUUUGUGUUUUAGGAAGUCAGGGGAGGAAAAUAUCCAGGCCGCAUCCUGUUGAUAUCCUAGGAGGCUCAAAGGCAGGAUAAGGCUCUGAGUG .(((.((((((..((((((.......)))))).((((((((.((((((((((((.....))).(....).)))).))))).)))))))).......)))))).)))............ ( -33.00) >rn3.chr15/103640558-103640440 ACGUGCUGCCCAGACAAAAGACCGCAUUUUGUGUCUUAGGAAGCCAGGGGAGGGAAAUAUCCAGGCCAUAUCCUGUUGAUAUCCUAGGAGGCUCAAAGGCAGGAUAAGGCUCUGAGUG .....((.(((......(((((.((.....))))))).((...)).))).)).........((((((.(((((((((((..((....))...)))...)))))))).))).))).... ( -35.30) >canFam1.chr22/15237869-15237987 AGUACUGUUUAGACAAAGGAUGGCAUUUUCUGUUUGGGGAAACCGGGAGAGGAAAAUCCUUGGGGCCAUAUCCUGCUGAUACCCUAGGAGACUCAAUAGCAGGAUAAGGCCCUGAGUG ..((((.........((((((....((((((.(((.((....)).))).))))))))))))((((((.((((((((((.......((....))...)))))))))).)))))).)))) ( -49.20) >consensus A_GUACUGCCUAGACAAAAGACAGCAUUUUCUGUUUGAGGAAACCAGGGGAGGAAAA_CAUCCAGGCCACAUCCUGCUGAUAUC_CUAGGAGGCUCAAAGGCAGGAUAAGGCCCUGAGUG .....((.((((((((.((((.....)))).))))).((....)).))).)).......(((.(((((.(((((((((.....................))))))))).))))).))).. (-28.76 = -28.45 + -0.31)