Structure #57467
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr13 |
Strand | - |
Position | 104,046,105 - 104,046,204 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken |
Mean pairwise identity | 75.66 |
Columns | 99 |
Mean single MFE | -22.06 |
Consensus MFE | -6.25 |
Combinations/base pair | 26 / 18 = 1.44 |
SCI | 0.28 |
z-score | -1.95 |
RNA class probability | 0.852306 |
This structure is part of cluster 29420
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 99 Columns: 99 Strand: + Mean pairwise identity: 75.66 Mean single sequence MFE: -22.06 Consensus MFE: -6.25 Energy contribution: -5.89 Covariance contribution: -0.36 Mean z-score: -1.95 Structure conservation index: 0.28 SVM decision value: 0.79 SVM RNA-class probability: 0.852306 Prediction: RNA ###################################################################### >hg17.chr13/104046204-104046105 CUUAAUUCACAGCCUGUUUAAAAUAGCACCAUCUCUGAUAGCUGUAAUCAGUUCCAUAACAACUGCUCCUGCUGCCACUUUGCAAAUCAGGCUGUGAGU ....((((((((((((........((((.......((..(((((....))))).)).......))))..(((.........)))...)))))))))))) ( -26.64) >canFam1.chr22/56801728-56801629 CUUAAUCCACAGCCUAUUUAAAAUAGCACAAUCUCUAAGAGCUGUAAUUAGUUUCCUAACAGCUCUUCCUCCUGCCACUUUGCAAAUCAGGCUGGGAGU .....(((.((((((.....................(((((((((...(((....)))))))))))).....(((......)))....))))))))).. ( -27.70) >mm5.chr8/6591296-6591197 CUUAAUUCACAUCCUGUUUAAAAUAGACCCAUCUCUGAUAGCUGUAAUUAGCUUCAUAACAGUUCUUCCCGCUGCCACUUGGCAAAGCCAGCUCUGAGU ....(((((....(((((......(((......)))((.(((((....)))))))..)))))........((((((....)))..)))......))))) ( -16.40) >rn3.chr16/1863748-1863845 CUUAAUUCACAGCCUGUUUAAAAUAGUACCAUCUCUGAUAGCUGUAAUUAGCUUCAUAACAGUUCUUCCCGCUGCCACUUGGCAAUGCCGACUGAGU .((((((.(((((.((((..................)))))))))))))))........(((((.....((.((((....)))).))..)))))... ( -17.47) >galGal2.chr1/53515274-53515373 CCUAAUUCAUGGACCAUUUAAAACAGAACUACUGCUGGUAGCCAUAAUUAGUUUCACAGGAACUCUUCCUUCUGCUGCUGCUUGAGUGAGACUGCUUGU .((((((.((((((((.......(((.....))).))))..))))))))))....(((((...(((..(((..((....))..)))..)))...))))) ( -22.10) >consensus CUUAAUUCACAGCCUGUUUAAAAUAGAACCAUCUCUGAUAGCUGUAAUUAGUUUCAUAACAGCUCUUCCUGCUGCCACUUGGCAAAUCAGGCUGUGAGU .((((((.((((.(((((..................))))))))))))))).....................(((......)))............... ( -6.25 = -5.89 + -0.36)