Structure #60825

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr14
Strand	-
Position	53,419,195 - 53,419,312
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	72.96
Columns	120
Mean single MFE	-32.72
Consensus MFE	-18.88
Combinations/base pair	34 / 26 = 1.31
SCI	0.58
z-score	-1.61
RNA class probability	0.670695

This structure is part of cluster 31319

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  72.96
 Mean single sequence MFE: -32.72
 Consensus MFE: -18.88
 Energy contribution: -20.92
 Covariance contribution:   2.04
 Mean z-score:  -1.61
 Structure conservation index:   0.58
 SVM decision value:   0.28
 SVM RNA-class probability: 0.670695
 Prediction: RNA

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>hg17.chr14/53419312-53419195
GUUACUUCUUCUGUGGUUAGGGCUAAAGGCAAAUGGGGUAACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACAUUAAGAAAGCAC
((((((((...(((..(((....)))..)))...))))))))....((((((...((.((((((......)))))).))...))))))............................. ( -25.60)
>mm5.chr14/38971542-38971426
CUUGCUUCUUCUGUAGUGAGGAUGGAGGUUAAUGGGGUAACUUCAGAAUGUAUUGUCUCCCGUUACAUGAUGGGAGACAGAGAAGUCACACGGGUAUUUUGGCAUUAAGAAAGUGC
..((((...(((((.((((.....(((((((......)))))))........((((((((((((....)))))))))))).....)))))))))......))))............ ( -36.20)
>rn3.chr15/22221447-22221338
CUCGCUUCUUCUGUGGUGAAGACGGAGGCUAAUGGGAGUAGCUCCAGAAUGUAUUGUCUCCCGUUAACACGAUGGGGGACGGAGAAGUCACACGGCGUUAAGACAGUGC
..((((((((.(((.(((..(((((((.(((.......)))))))........((((((((((((.....))))))))))))....))).))).)))..)))).)))). ( -37.40)
>canFam1.chr8/32834636-32834531
GUUACUUCUUCUGAAGGCAAAUGGGGUAACUUCAGAAUUUAUUGUCUCCCAUUACAUUAUGGGAAACUAAAAAUUCACACGGGUAUUUUAACGUUAAGAAAGCAC
((((((((...((....))...))))))))(((.((((((...((.((((((......)))))).))...))))))..(((..........)))...)))..... ( -23.30)
>galGal2.chr5/55219298-55219182
GUCACUUCUUCUGUGCUGCGUCUGAAGGCACGCGGGGUAACCUCAGAAUUCAUUGUUUCCCCUGACACGAUGGGAAACAGCAAAUUCACACGGGUAUAUCCCACAGCGAGGAGCGC
....(((((((((((((((........))).))((((((((((..(((((..(((((((((..........)))))))))..)))))....)))).)))))))))).))))))... ( -41.10)
>consensus
GUUACUUCUUCUGUGGUGAGGA_UGAAGGCAAAUGGG_GUAACUUCAGAAUUUAUUGUCUCCCAUUA_CAUGAUGGGAAACAGAAAAUUCACACGGGUAU_UUUAACAUUAAGAAAGCGC
..........(((((.........((((..............)))).((((((.(((((((((((.......))))))))))).)))))).)))))........................ (-18.88 = -20.92 +   2.04) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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