Structure #72680

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr16
Strand	-
Position	978,079 - 978,167
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.3
Columns	88
Mean single MFE	-38.33
Consensus MFE	-21.4
Combinations/base pair	30 / 24 = 1.25
SCI	0.56
z-score	-3.85
RNA class probability	0.996945

This structure is part of cluster 37931

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 88
 Columns: 88
 Strand: +
 Mean pairwise identity:  80.30
 Mean single sequence MFE: -38.32
 Consensus MFE: -21.40
 Energy contribution: -23.28
 Covariance contribution:   1.88
 Mean z-score:  -3.85
 Structure conservation index:   0.56
 SVM decision value:   2.77
 SVM RNA-class probability: 0.996945
 Prediction: RNA

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>hg17.chr16/978167-978079
CCCAGGAGUUAACUCACAGCAGCCCUGCCAAGUCCACACAAAACUGGCAGGGCCUCCCAGUCCCUGGGAACCUGGCAAGCCCCAAAGC
.(((((...............(((((((((.((.........))))))))))).((((((...)))))).)))))............. ( -34.70)
>mm5.chr17/69396914-69397002
CCCAGGAGUUAAUACUCAGGAGGCUUGCCAAGUUCCAACAGAACUGGCAGGGCCACCCGGCCCUUGGGAACCUGGCAAGCCCCAAAGC
.....((((....)))).((.(((((((((.(((((..((....))..((((((....))))))..))))).)))))))))))..... ( -44.40)
>rn3.chr10/95915389-95915477
CCCAGGAGUUAAUACUCAGGAGGCUUGCCAAGUCCCAACAGGACUGGCAGGGCCACCCGGCCCUUGGGAACCUGGCAAGCCUCAAAGC
.....((((....))))..(((((((((((..(((((.((....))..((((((....)))))))))))...)))))))))))..... ( -45.50)
>canFam1.chr6/37814090-37814173
CCCAGGUUACCACGCAGGAGCCCCUCCAAGUGCAAACAAAACUGGCAGAGCCUGCAGCCCUGGGGAGCCUGGCAGGGCCCGGC
((((((....(((...((((...))))..)))............((((...))))...))))))..(((.(((...))).))) ( -28.70)
>consensus
CCCAGGAGUUAACACUCAGGAGCCCUGCCAAGUCCAAACAAAACUGGCAGGGCCACCCAGCCCUUGGGAACCUGGCAAGCCCCAAAGC
..................((.(((((((((.(((((((((....))...((((......))))))))).)).)))))))))))..... (-21.40 = -23.28 +   1.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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