Structure #110235

Summary

Genome/Assembly hg17
Chromosome/Contig chr2
Strand -
Position 179,216,697 - 179,216,767
Number of sequences 6
Organisms human, dog, mouse, rat, chicken, zebrafish, fugu
Mean pairwise identity 70.02
Columns 84
Mean single MFE -23.73
Consensus MFE -17.93
Combinations/base pair 33 / 20 = 1.65
SCI 0.76
z-score -4.04
RNA class probability 0.969764

This structure is part of cluster 58300

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 84
 Columns: 84
 Strand: +
 Mean pairwise identity:  70.02
 Mean single sequence MFE: -23.73
 Consensus MFE: -17.93
 Energy contribution: -16.10
 Covariance contribution:  -1.83
 Mean z-score:  -4.04
 Structure conservation index:   0.76
 SVM decision value:   1.65
 SVM RNA-class probability: 0.969764
 Prediction: RNA

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>hg17.chr2/179216767-179216697
AUCAGAAAUGUAAGGCAUUGGUGAUGUUUGCAUUUACCCUCCUGUAAGCAACACUUUAACGUCUUACAUU
......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -21.90)
>mm5.chr2/76598706-76598636
AUCAGAAAUGUAAGGCAUUGGUGAUGUUUGCAUCUACCCUCCUGUAAGCAACACUUUAACGUCUUACGUU
......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -21.50)
>rn3.chr3/59301372-59301302
AUCAGAGACAUAAGGCAUUGGUGAUGUUUGCAUCUACCCUCCUGUAAGCAGCACUUUAACGUCUUAUGUU
......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -22.30)
>galGal2.chr7/21153603-21153673
AUCAGAAAUGUAAGGCACUGGUGAUAUUUACAAUUACCCUCCUGUAAGUAUUACUUUAAUGUUUUACAUU
......(((((((((((..(((((((((((((..........)))))))))))))....))))))))))) ( -21.80)
>danRer1.chrUn/522-438
ACAAGAAUUUAUGACUUGAAUGUAAGACCUUGAGUGCUGUUUGCAUUUUACCCUCAUGUAAGCAGGACAACUGGGUCUUGUGUU
.((((.........))))((..((((((((...((.((((((((((.........)))))))))).))....))))))))..)) ( -27.40)
>fr1.chrUn/124298735-124298805
ACUGUGAACUUAAGACCCUGAGUGCUGCUUCCAUCACCCUCAUGGAAGCAGCAGGAACCGGUCCUGAGCU
........((((.((((.....((((((((((((.......))))))))))))......)))).)))).. ( -27.50)
>consensus
AUCAGAA____________AUGUAAGGCAUUG_GUGAUGUUUGCAUCU_ACCCUCCUGUAAGCAGCACUUUAACGUCUUACGUU
...................(((((((((.....(((.((((((((...........)))))))).)))......))))))))). (-17.93 = -16.10 +  -1.83) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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