Structure #110235
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr2 |
Strand | - |
Position | 179,216,697 - 179,216,767 |
Number of sequences | 6 |
Organisms | human, dog, mouse, rat, chicken, zebrafish, fugu |
Mean pairwise identity | 70.02 |
Columns | 84 |
Mean single MFE | -23.73 |
Consensus MFE | -17.93 |
Combinations/base pair | 33 / 20 = 1.65 |
SCI | 0.76 |
z-score | -4.04 |
RNA class probability | 0.969764 |
This structure is part of cluster 58300
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 84 Columns: 84 Strand: + Mean pairwise identity: 70.02 Mean single sequence MFE: -23.73 Consensus MFE: -17.93 Energy contribution: -16.10 Covariance contribution: -1.83 Mean z-score: -4.04 Structure conservation index: 0.76 SVM decision value: 1.65 SVM RNA-class probability: 0.969764 Prediction: RNA ###################################################################### >hg17.chr2/179216767-179216697 AUCAGAAAUGUAAGGCAUUGGUGAUGUUUGCAUUUACCCUCCUGUAAGCAACACUUUAACGUCUUACAUU ......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -21.90) >mm5.chr2/76598706-76598636 AUCAGAAAUGUAAGGCAUUGGUGAUGUUUGCAUCUACCCUCCUGUAAGCAACACUUUAACGUCUUACGUU ......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -21.50) >rn3.chr3/59301372-59301302 AUCAGAGACAUAAGGCAUUGGUGAUGUUUGCAUCUACCCUCCUGUAAGCAGCACUUUAACGUCUUAUGUU ......((((((((((...((((.((((((((..........)))))))).)))).....)))))))))) ( -22.30) >galGal2.chr7/21153603-21153673 AUCAGAAAUGUAAGGCACUGGUGAUAUUUACAAUUACCCUCCUGUAAGUAUUACUUUAAUGUUUUACAUU ......(((((((((((..(((((((((((((..........)))))))))))))....))))))))))) ( -21.80) >danRer1.chrUn/522-438 ACAAGAAUUUAUGACUUGAAUGUAAGACCUUGAGUGCUGUUUGCAUUUUACCCUCAUGUAAGCAGGACAACUGGGUCUUGUGUU .((((.........))))((..((((((((...((.((((((((((.........)))))))))).))....))))))))..)) ( -27.40) >fr1.chrUn/124298735-124298805 ACUGUGAACUUAAGACCCUGAGUGCUGCUUCCAUCACCCUCAUGGAAGCAGCAGGAACCGGUCCUGAGCU ........((((.((((.....((((((((((((.......))))))))))))......)))).)))).. ( -27.50) >consensus AUCAGAA____________AUGUAAGGCAUUG_GUGAUGUUUGCAUCU_ACCCUCCUGUAAGCAGCACUUUAACGUCUUACGUU ...................(((((((((.....(((.((((((((...........)))))))).)))......))))))))). (-17.93 = -16.10 + -1.83)