Structure #115652

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr20
Strand	+
Position	6,772,104 - 6,772,223
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.44
Columns	120
Mean single MFE	-36.86
Consensus MFE	-32.25
Combinations/base pair	53 / 39 = 1.36
SCI	0.88
z-score	-2.24
RNA class probability	0.992374

This structure is part of cluster 61291

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.44
 Mean single sequence MFE: -36.86
 Consensus MFE: -32.25
 Energy contribution: -32.62
 Covariance contribution:   0.38
 Mean z-score:  -2.24
 Structure conservation index:   0.88
 SVM decision value:   2.32
 SVM RNA-class probability: 0.992374
 Prediction: RNA

######################################################################

>hg17.chr20/6772104-6772223
UUUCUGCCUAUGUUUUAAUUCAAUAAGUGUUUAUUGUGCUUAGGGCAAAGAAGGGCUCCAGUUUUGUGUGCUGUGAACUGCAAAGCUGGAGCCCUCUGGAGAAUUCAGUUCCUGCCAUG
.......................((((..(.....)..)))).((((.(((.(((((((((((((((((.......)).))))))))))))))))))((((.......))))))))... ( -41.90)
>mm5.chr2/133374895-133375015
CUUCUGCCUGAGCUUUAAUUCACUUAGCAUUUAUUGUGGUCAGGGCAAGGAAGGGUUCCAGUUUUGUGUGCUAAGGAAUCGCAAUGCUGGGAUCCUCUGCAGAGUUUAGUUGCUGCUGUC
....(((((..(((.((((.............)))).)))..))))).(((.((((((((((.(((((..(....)...))))).)))))))))))))(((((((......))).)))). ( -38.22)
>rn3.chr3/121359321-121359438
CUUCUGUUUGAGCUUUAAUUCACUUAGCAUUUAUUGUGGUCAGGGCAAGGAAGGCUUCCAGUUUUGUGUGCUAAGGAACUGCAGUGCUGGGAUCCUUUGCAGAGUUUUGCUGCUGAA
.((((((....(((((...((((............))))..)))))...(((((.(((((((.((((((........)).)))).))))))).)))))))))))............. ( -30.70)
>canFam1.chr24/32572396-32572278
UUUCUGCCUAUGUUUUAAUUCAGUAAGUAUUUAUUGUGCUUAGAGCAAAGAAGGGCUCUAGUUUUGUGUGCUAUAAACCACAAAUCUGGAGCCCUCUGCAACUUUAGUUCCUGUUGUG
..........((((((((..((((((....))))))...)))))))).(((.(((((((((.((((((.(.......))))))).))))))))))))(((((..........))))). ( -36.60)
>consensus
CUUCUGCCUAAGCUUUAAUUCACUAAGCAUUUAUUGUGCUCAGGGCAAAGAAGGGCUCCAGUUUUGUGUGCU_AGGAACCGCAAAGCUGGAACCCUCUGCAGAGUUUAGUUCCUGCUGUG
.((((((....(((((((((((((........)))).)))))))))..(((.(((((((((((((((((........)).))))))))))))))))))))))))................ (-32.25 = -32.62 +   0.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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