Structure #115658
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | + |
Position | 6,772,144 - 6,772,247 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 77.53 |
Columns | 104 |
Mean single MFE | -38.62 |
Consensus MFE | -29.62 |
Combinations/base pair | 40 / 29 = 1.38 |
SCI | 0.77 |
z-score | -2.76 |
RNA class probability | 0.999149 |
This structure is part of cluster 61291
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 104 Columns: 104 Strand: + Mean pairwise identity: 77.53 Mean single sequence MFE: -38.62 Consensus MFE: -29.62 Energy contribution: -28.88 Covariance contribution: -0.75 Mean z-score: -2.76 Structure conservation index: 0.77 SVM decision value: 3.40 SVM RNA-class probability: 0.999149 Prediction: RNA ###################################################################### >hg17.chr20/6772144-6772247 UAGGGCAAAGAAGGGCUCCAGUUUUGUGUGCUGUGAACUGCAAAGCUGGAGCCCUCUGGAGAAUUCAGUUCCUGCCAUGUCUGCCACCUGAUUCUCACCUGGC ...((((.(((.(((((((((((((((((.......)).))))))))))))))))))((((.......))))))))......((((..((.....))..)))) ( -43.50) >mm5.chr2/133374935-133375039 CAGGGCAAGGAAGGGUUCCAGUUUUGUGUGCUAAGGAAUCGCAAUGCUGGGAUCCUCUGCAGAGUUUAGUUGCUGCUGUCUCUGCCACCUGCUCCUCACCUGGC ((((...(((((((((((((((.(((((..(....)...))))).)))))))))))..((((((..((((....)))).)))))).......))))..)))).. ( -44.10) >rn3.chr3/121359361-121359461 CAGGGCAAGGAAGGCUUCCAGUUUUGUGUGCUAAGGAACUGCAGUGCUGGGAUCCUUUGCAGAGUUUUGCUGCUGAAUCUGCACCUGCUCCUCACCUGGC ((((...(((((((.(((((((.((((((........)).)))).))))))).))).((((((.((........)).)))))).....))))..)))).. ( -33.70) >canFam1.chr24/32572416-32572318 UAGAGCAAAGAAGGGCUCUAGUUUUGUGUGCUAUAAACCACAAAUCUGGAGCCCUCUGCAACUUUAGUUCCUGUUGUGUUUGCCACCUGGUUCUCAGC (((((...(((.(((((((((.((((((.(.......))))))).))))))))))))....)))))......((((.(...(((....))).).)))) ( -33.20) >consensus CAGGGCAAAGAAGGGCUCCAGUUUUGUGUGCU_AGGAACCGCAAAGCUGGAACCCUCUGCAGAGUUUAGUUCCUGCUGUGUCUGCCACCUGCUCCUCACCUGGC ((((....(((((((((((((((((((((........)).))))))))))))))))..((((..........))))....)))....))))............. (-29.62 = -28.88 + -0.75)