Structure #116862
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | + |
Position | 21,196,730 - 21,196,846 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken |
Mean pairwise identity | 65.64 |
Columns | 120 |
Mean single MFE | -32.88 |
Consensus MFE | -14.72 |
Combinations/base pair | 51 / 32 = 1.59 |
SCI | 0.45 |
z-score | -2.4 |
RNA class probability | 0.989825 |
This structure is part of cluster 61977
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 65.64 Mean single sequence MFE: -32.88 Consensus MFE: -14.72 Energy contribution: -13.88 Covariance contribution: -0.84 Mean z-score: -2.40 Structure conservation index: 0.45 SVM decision value: 2.18 SVM RNA-class probability: 0.989825 Prediction: RNA ###################################################################### >hg17.chr20/21196730-21196846 ACUCCUCCUAAGGAAAGACUCUUUAGCAUUCAGCAGCCGAGAUUUCAAGUCUAACUGCUUUUGGUGGUAGUUUCAUAUGUGUAUUUCAAAAAUCACCUGGAAAUCUCCAGCUCCUU .......(((((((.....))))))).....((.(((.((((((((.((...(((((((......)))))))......(((.(((.....)))))))).))))))))..))).)). ( -25.10) >canFam1.chr24/45560207-45560092 ACUCAUCCAGUGGAAACACACAUUAGCAUUCAGCAGCCAAGAUUUCAAGUCUAACUGCUUCUGGUAGUGGUUCUGUAUAUUUAUUUCGGAAUCAUCUGGAAAUCUCUGGCUCCUU .........(((....)))......((.....))((((((((((((.((....(((((.....)))))(((((((...........)))))))..)).))))))).))))).... ( -32.80) >mm5.chr2/146727866-146727981 CCUUGUCCAGUGGAAAGGCUCAUUGGCAUUCAGCAGCUAAGAUUUCAAGUCCAACUGCUUUAGGUAGUAGUUGUAGAUAUUUGCUUCUAACGCAUCUGGAAAUCUCUGGCUCCUU ...((.(((((((......)))))))))...((.((((((((((((.....((((((((......))))))))((((....(((.......)))))))))))))).))))).)). ( -33.20) >rn3.chr3/135523048-135523163 CCUUGUCCAAUGGGAAGGCUCAUUGGCAUUCAGCAGCUAAGAUUUCAAGUCCAACUGCUUUAGGUAGUGGUUGUAGAUAUUUGCUUCAAAAGCAUCUGGAAAUCUCUGGCUCCUU ...((.((((((((....))))))))))...((.((((((((((((.....((((..((......))..))))((((....((((.....))))))))))))))).))))).)). ( -36.00) >galGal2.chr3/105171937-105171831 AGUUCAUCUGGAAAAAGUCUCUGCGAGCUGCGCUGCGAAGUAACGCUGCAUCACAUCUGCAGCGCCUUUGUAGUUUUAAGCUCUUUCUGAGUGAUUCUGGGUUCUU .....(((..(((..(.((.....(((((..(((((((((...(((((((.......))))))).)))))))))....))))).....)).)..)))..))).... ( -37.30) >consensus ACUUCUCCAGUGGAAAGACUCAUUGGCAUUCAGCAGCUAAGAUUUCAAGUCCAACUGCUU____UAGGUAGUGGUUGUAUAUAUUUGUUUCAAAAG_CAUCUGGAAAUCUCUGGCUCCUU ......(((((((......))))))).....((.((((((((((((.((....((((((.......))))))(((...........)))...........)).))))))).))))).)). (-14.72 = -13.88 + -0.84)