Structure #116867
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | + |
Position | 21,196,806 - 21,196,922 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken |
Mean pairwise identity | 70.33 |
Columns | 120 |
Mean single MFE | -25.74 |
Consensus MFE | -9.34 |
Combinations/base pair | 42 / 28 = 1.50 |
SCI | 0.36 |
z-score | -1.91 |
RNA class probability | 0.831492 |
This structure is part of cluster 61977
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 70.33 Mean single sequence MFE: -25.74 Consensus MFE: -9.34 Energy contribution: -8.34 Covariance contribution: -1.00 Mean z-score: -1.91 Structure conservation index: 0.36 SVM decision value: 0.72 SVM RNA-class probability: 0.831492 Prediction: RNA ###################################################################### >hg17.chr20/21196806-21196922 AUGUGUAUUUCAAAAAUCACCUGGAAAUCUCCAGCUCCUUAAGGCGGCUCCCUUUAAAUCUUUUUGAAUGACAUGGUGUUGUCAAUUGCCUCCUUCUACUGACAUCUUCCAUGUCC ........((((((((....(((((....)))))....((((((.(....)))))))...)))))))).(((((((...(((((...............)))))....))))))). ( -27.76) >canFam1.chr24/45560283-45560168 AUAUUUAUUUCGGAAUCAUCUGGAAAUCUCUGGCUCCUUAAGGUAGCUCCCUUUAAAUCUUUUUGAACGACAUGGUGUCGUCAUUUGCCUCACUGCGUCGAUGUUUUCCAUUUCC ...........((((.....((((((.....((((((....)).))))...((((((....))))))((((..((((..((.....))..))))..))))....)))))).)))) ( -24.30) >mm5.chr2/146727942-146728057 AUAUUUGCUUCUAACGCAUCUGGAAAUCUCUGGCUCCUUGAGGUAGCUCCCUUUAAAUCUUUUUGAAAGACAUGGUGCCAUCAUGUACCUCCCUCUGCUGAUGUUUUCCAUUUCC .....(((.......)))..((((((.(..((((.....(((((.......((((((....))))))..(((((((...)))))))))))).....))))..).))))))..... ( -24.00) >rn3.chr3/135523124-135523239 AUAUUUGCUUCAAAAGCAUCUGGAAAUCUCUGGCUCCUUGAGGUAGCUCCCUUUAAGUCUUUUUGAAAGACACGGUGCCAUCGUGUACCUCCUUCUGCUGAUGUUUUCCAUUUCC .....((((.....))))..((((((.(..((((.....((((((...........(((((.....)))))(((((...))))).)))))).....))))..).))))))..... ( -27.00) >galGal2.chr3/105172010-105171902 AGUUUUAAGCUCUUUCUGAGUGAUUCUGGGUUCUUGAUGUCAGCCCACUUUAAAUCUCCUUGCAUGAUACAAGGCACCCAUCACUAGUCUCUGGUGCUUUUCAUUCCC ......((((.((.....(((((...((((((((((.(((((((.................)).)))))))))).)))))))))).......)).))))......... ( -25.63) >consensus AUAUUUGUUUCAAAAG_CAUCUGGAAAUCUCUGGCUCCUUGAGGU_AGCUCCCUUUAAAUCUUUUUGAAAGACAUGGUG___CCAUCAUUUGCCUCCCUCUGCUGAUGUUUUCCAUUUCC ........((((((......(((((....)))))....((((((........)))))).....)))))).((.((((......(((((...............)))))....)))).)). ( -9.34 = -8.34 + -1.00)