Structure #117675
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | - |
Position | 34,330,779 - 34,330,896 |
Number of sequences | 4 |
Organisms | human, dog, mouse, rat |
Mean pairwise identity | 69.94 |
Columns | 120 |
Mean single MFE | -50.15 |
Consensus MFE | -28.08 |
Combinations/base pair | 41 / 28 = 1.46 |
SCI | 0.56 |
z-score | -2.55 |
RNA class probability | 0.99889 |
This structure is part of cluster 62382
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 69.94 Mean single sequence MFE: -50.15 Consensus MFE: -28.08 Energy contribution: -27.71 Covariance contribution: -0.37 Mean z-score: -2.55 Structure conservation index: 0.56 SVM decision value: 3.27 SVM RNA-class probability: 0.998890 Prediction: RNA ###################################################################### >hg17.chr20/34330896-34330779 UCCCUACAGACAGGGGUCACAGACCAGGCUUAGGCCCCCUGUAGAUGAGGCAGGGCCUCGGAGCGGGAGCUUGACCCCAGCAAACGCUUGUUCUAGCUCCAUCUGAGCCUGGCCUGG (((((......)))))...(((.(((((((((((..((((((.......))))))....((((((((........)))(((....))).......))))).))))))))))).))). ( -53.70) >canFam1.chr24/28021146-28021031 UCCCUACAGACAAGGGUCAAGACCAGGCUGGGGCCCCUGCUGAUGAGGCAGGGCCUCAGAGCAGGAGCUUGACCCCAGCAAAAGCUUGUUCUGGCUCCAUCUGAGACUGGCCUGG .((((.......))))......((((((..((((((.((((.....)))))))))(((((...((((((.(((...(((....))).)))..)))))).)))))..)..)))))) ( -54.80) >mm5.chr2/156652126-156652030 CAGGCAGGUCACAGGCCAGGCUCAGUCCCCCGCUGAGGAUCAGGGCUUCCUGCAGGAGUUGGACCCAGGUAAAGGCUUGCUGUGAAUCUGGCCUGG (((((((((((((((((...((((((.....)))))).(((.(((..(((.((....)).)))))).)))...)))...))))).)))).))))). ( -39.30) >rn3.chr3/146911629-146911528 UCCUGCAGGCGGGUCACGGGCCAGGCUCAACCCCCUGCUGAGGAUCAGGGCUUCCUGUAGGAGCUGGACCCAGGUAAAGCCUUGCUGGGAGCCUGGCCUGG .((((....))))...((((((((((((....(((((........)))))...((.(((((.(((..((....))..)))))))).)))))))))))))). ( -52.80) >consensus UCC_UACAGACAGG__UCACAGACCAGGCUCAGGCCCCC____GAUGAGG__CAGGGCCUC_CAGCAGG_AGCUGGACCCAAGCAAAGGCUUGCUCU__________GAGCCUGGCCUGG ...................((((((((((((((((((.................))))))..(((((((..(((.......))).....)))))))...........)))))))))))). (-28.08 = -27.71 + -0.37)