Structure #118033
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | - |
Position | 37,552,068 - 37,552,163 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 73.61 |
Columns | 96 |
Mean single MFE | -31.98 |
Consensus MFE | -20.74 |
Combinations/base pair | 30 / 22 = 1.36 |
SCI | 0.65 |
z-score | -2.16 |
RNA class probability | 0.991237 |
This structure is part of cluster 62565
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 96 Columns: 96 Strand: + Mean pairwise identity: 73.61 Mean single sequence MFE: -31.98 Consensus MFE: -20.74 Energy contribution: -21.30 Covariance contribution: 0.56 Mean z-score: -2.16 Structure conservation index: 0.65 SVM decision value: 2.26 SVM RNA-class probability: 0.991237 Prediction: RNA ###################################################################### >hg17.chr20/37552163-37552068 UCAAGGAGGGCUUGGCUGUCUGGACCACAAGAAAAAUCAUCAGACUUUGGCCAGUCAAGCAGGGCCGGCAAGGCCCACCUCACUCUUGAGCCAAA ((((((((((((((((((.(..((......((....)).......))..).))))))))).(((((.....))))).))))...)))))...... ( -37.32) >mm5.chr2/159324862-159324766 UCAGGGAGGCCCUGGCCAUCUGGACCACAAGAGAAACCAUCAAACUUUGGCUACAGAAACGGAACCAGGCAGGCCUAGUCCAACUCCUGAGCCAAA (((((..(((....))).))))).......................((((((.(((....(((...(((....)))..))).....))))))))). ( -27.20) >rn3.chr3/149912523-149912427 UCAGGGAGGCCUUGGCCAUCUGGACCACAAGAGAAACCAUCAGACUUUGGCUACAGAAGCAGAACCAGCAGGGCCUGGUCCAAUUCCUGAGCCAAA ((((((((((....)))...(((((((...((.......)).......((((......((.......))..))))))))))).)))))))...... ( -30.80) >canFam1.chr24/30705726-30705645 UCAGGGAGGGGGUGGCCAUCUGGACCAGACUUCGGCCAGCCGAGCAGCGCCAGCAAGGCCCAUCCCAACUCUUGAGCCAAA ((((((..(((((((((..((((....(..(((((....)))))...).))))...)).)))))))...))))))...... ( -32.60) >consensus UCAGGGAGGCCUUGGCCAUCUGGACCACAAGAGAAACCAUCAGACUUUGGCCACACAAGCAGAACCAGCAAGGCCCAGCCCAACUCCUGAGCCAAA ((((((.(((((.((((..((((.............(((........)))..............))))...)))).)))))...))))))...... (-20.74 = -21.30 + 0.56)