Structure #119069
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr20 |
Strand | - |
Position | 48,283,591 - 48,283,708 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 84.38 |
Columns | 118 |
Mean single MFE | -52.67 |
Consensus MFE | -44.23 |
Combinations/base pair | 42 / 33 = 1.27 |
SCI | 0.84 |
z-score | -3.36 |
RNA class probability | 0.997966 |
This structure is part of cluster 63128
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 118 Columns: 118 Strand: + Mean pairwise identity: 84.38 Mean single sequence MFE: -52.68 Consensus MFE: -44.23 Energy contribution: -42.42 Covariance contribution: -1.81 Mean z-score: -3.36 Structure conservation index: 0.84 SVM decision value: 2.97 SVM RNA-class probability: 0.997966 Prediction: RNA ###################################################################### >hg17.chr20/48283708-48283591 AACCUCCUUAAUUAACUGGCAAUGAUUAAGAGGCCACCUUGGGAGGCCCCUGAGGCCUCAAGGAGGGCUGGGGGCCUGAAAUUGGGGGCAGGGCCCCCCAGUCAUGGCAGGCUCAGA ..((..((((((((........)))))))).((((..(((..((((((.....)))))).)))..))))))(((((((..((((((((......)))))))).....)))))))... ( -53.60) >mm5.chr2/167784797-167784687 AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAGGGAAGACUGGGGGCCCAAAAUUGGGGGCAGGGCCCCUUGGUCACGCAGA ..................((.(((((((((.((((.(....)...(((((((((.((((((......)))))).)))......))))))..)))).)))))))))))... ( -51.20) >rn3.chr3/158763926-158763816 AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAGGGGAGGUUGGGGGCCCAAAAUUGGGGGCAGGGCCCCUUGGUCAUGCAGA ..................(((.((((((((.((((.(((..(....(((((((....)))))))...)..)))((((........))))..)))).)))))))))))... ( -51.30) >canFam1.chr24/39618752-39618634 AACCUCCUUAAUUAACCGGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCCAGGGCUUCAAGGAAGGCUGGGGGCCGGGAACUGGGGGCAGGGCCCCCCCAGCCAUGGCAGGCUCAGA ..(((.((((((((........))))))))..((((((((((..(((((...)))))))))))..(((((((((...((..(((....)))..))))))))))).)))))))...... ( -54.60) >consensus AACCUCCUUAAUUAACCAGCAGUGAUUAAGAGGCCACCUUGGAAGGCCCCUGGGGCUCCAAGGAAGGCUGGGGGCCCAAAAUUGGGGGCAGGGCCCCCC_AGUCAUG_______CAGA ..((((.(((((((........)))))))))))...(((((((..(((.....))))))))))..((((((((((((.............))))))))..)))).............. (-44.23 = -42.42 + -1.81)