Structure #150897

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr5
Strand	-
Position	131,616,864 - 131,616,984
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.64
Columns	120
Mean single MFE	-55.4
Consensus MFE	-42.54
Combinations/base pair	48 / 35 = 1.37
SCI	0.77
z-score	-3.42
RNA class probability	0.999119

This structure is part of cluster 83596

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.64
 Mean single sequence MFE: -55.40
 Consensus MFE: -42.54
 Energy contribution: -41.23
 Covariance contribution:  -1.31
 Mean z-score:  -3.42
 Structure conservation index:   0.77
 SVM decision value:   3.38
 SVM RNA-class probability: 0.999119
 Prediction: RNA

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>hg17.chr5/131616984-131616864
AGAAAACCAGUCUGCUCUGGGACCCAACAAAGGGGUUGCCAGGCAGCAGGGCGGGGACAGGUUUACCUAGCUGGGCCCAGAGAGGCCCUGGCCCUGAGGCCUGGGUGUAGAAAGGUGUUG
.....(((..(((((.(...(((((.......))))).((((((..((((((..((..(((....)))..))(((((......)))))..))))))..))))))).)))))..))).... ( -57.80)
>mm5.chr11/67935715-67935834
AGGAAAACAGCCUGUUCUGAGACCCAACAAAGAGACUCUUGGGUGGCAGGGCGGGAACAGGUGUAUCCAGCUGAGCCCAUGAGGCCCCAGCCCUGAGGCCUGGGAGAAGGAGGGUGUUG
.....((((.(((.((((............)))).((((..(((..(((((((((..(((.((....)).))).(((.....)))))).))))))..)))..))))....))).)))). ( -49.40)
>rn3.chr10/71234238-71234356
AGGAAAACAGCCUGCUUUGGGACCCAACAAAGAGACUCUUGGGUGGCAGGGCGGGGACAGGUGUACCCAGCUGAGCCCAUGAGGCCCCAGCCCUGAGGCCUGGGAGAAGAAGGGUGUG
......(((.(((.(((((........)))))...((((..(((..((((((.(((.(((.((....)).))).(((.....)))))).))))))..)))..))))....))).))). ( -53.20)
>canFam1.chr11/21933311-21933192
AGAAAACCUGUCUACUCUGGGUCCCAACAAAGGGGCUGCCAGGCAUCAGGGCAGGGGCAGGUUUACCCAGCUGGGCCCAGGGAGGCCCCAGCCCUGAGGCUUGGGAGUGGAGGAUGUUG
......((..(((((((..((((((......)))))).((((((.(((((((.(((((.((....))...(((....)))....))))).))))))).)))))))))))))))...... ( -61.20)
>consensus
AGAAAAACAGCCUGCUCUGGGACCCAACAAAGAGACUCCCAGGCAGCAGGGCGGGGACAGGUGUACCCAGCUGAGCCCAG_GAGGCCCCAGCCCUGAGGCCUGGGAGAAGAAGGGUGUUG
.........((((.((((..(......)..)))).(((((((((..((((((.(((.(((.((....)).))).(((......)))))).))))))..))))))))).....)))).... (-42.54 = -41.23 +  -1.31)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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