Structure #161235

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	75,043,494 - 75,043,608
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	89.68
Columns	115
Mean single MFE	-27.9
Consensus MFE	-23.7
Combinations/base pair	46 / 39 = 1.18
SCI	0.85
z-score	-2.27
RNA class probability	0.960012

This structure is part of cluster 89326

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 115
 Columns: 115
 Strand: +
 Mean pairwise identity:  89.68
 Mean single sequence MFE: -27.90
 Consensus MFE: -23.70
 Energy contribution: -24.95
 Covariance contribution:   1.25
 Mean z-score:  -2.27
 Structure conservation index:   0.85
 SVM decision value:   1.49
 SVM RNA-class probability: 0.960012
 Prediction: RNA

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>hg17.chr6/75043608-75043494
AGUGGGAAAAGCCAUUAGGUUUGAUUUUUGUCAACUUUAUGUUCAGGCCACAGAUGUUAGCAUGACACUUAAUAUUUCUGGUUUAUGGGGAAAAUUAGAAAAGAAUGCUCACAA
.(((((..(((((....)))))(((((((.(((((.....))..((((((.(((((((((........))))))))).)))))).))).)))))))...........))))).. ( -26.10)
>mm5.chr9/79408515-79408401
AGUGGAAAAAGCCAUUAAAGUUGAUUUUUGUCAACUUUAUGUUUAGCCACAGAUGUUAGCAUGACACUUAAUAAUUUCUGGUUUAUGGAGGAAAUUAGAAGAGAAUCCUAACAA
.((((...((((...((((((((((....)))))))))).))))..))))...((((((...((..(((..((((((((..........))))))))...)))..)))))))). ( -29.50)
>rn3.chr8/84014985-84014871
AGUGGAAAAAGCCAUUAAAGUUGAUUUUUGUCAACUUUAUGUUUAGCCACAGAUGUUAGCAUGACACUUAAUAAUUUCUGGUUUAUGGAGGAAAUUAGAAGAGAAUGCUAACAA
.((((...((((...((((((((((....)))))))))).))))..))))...(((((((((....(((..((((((((..........))))))))...))).))))))))). ( -35.90)
>canFam1.chr12/39086846-39086732
AGUAGGAAAGGCCAUUAAAGUUCUUUUUUGUCAACUUUAUGUUCAGGUCACAGAUGUUAGCAUGACACUCAAUACUUCUAGUUUAUGGGGGAAAUUAGAACAGAAUGUUCACAA
.........(..((((...(((((..(((.......(((((((.(.(((...))).).))))))).........((((((.....)))))))))..)))))..))))..).... ( -20.10)
>consensus
AGUGGAAAAAGCCAUUAAAGUUGAUUUUUGUCAACUUUAUGUUCAG_CCACAGAUGUUAGCAUGACACUUAAUA_UUUCUGGUUUAUGGAGGAAAUUAGAAGAGAAUGCUAACAA
.((((...((((...((((((((((....)))))))))).))))...))))...(((((((((....(((......(((((((((.......)))))))))))).))))))))). (-23.70 = -24.95 +   1.25)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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