Structure #161687
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | + |
Position | 85,997,067 - 85,997,187 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 81.36 |
Columns | 120 |
Mean single MFE | -37.5 |
Consensus MFE | -30.15 |
Combinations/base pair | 43 / 33 = 1.30 |
SCI | 0.8 |
z-score | -2.34 |
RNA class probability | 0.9805 |
This structure is part of cluster 89617
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.36 Mean single sequence MFE: -37.50 Consensus MFE: -30.15 Energy contribution: -28.65 Covariance contribution: -1.50 Mean z-score: -2.34 Structure conservation index: 0.80 SVM decision value: 1.86 SVM RNA-class probability: 0.980500 Prediction: RNA ###################################################################### >hg17.chr6/85997067-85997187 GGGAAUUGCCCACUCUGACACCUUUGGAGUGAUGCGUUCCAAUAUUGUUUUAAUAUCAAAUCCAGAUAAGCUGGGAGGUCUCAUCCUCCUUGCCAUGUGUGCACAGAGAAGCACACAUUU .(((((.((.(((((..(.....)..)))))..))))))).............((((.......)))).((.((((((......)))))).)).((((((((........)))))))).. ( -40.00) >mm5.chr9/88596544-88596663 GGGAAUUGCCAGCUCUGACACCUUCAGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCAGGAGGUCUCCCCCUCCCCAGAGGCAGGCAUGGAGAAGCAUGCUUUU .(((.(((...(((((((.....)))))))(((((......)))))..........))).)))......(((.(((((......))))).....)))(((((((......))))))).. ( -35.50) >rn3.chr8/93416977-93417096 GGGAAUUGCCAGUUCUGACACCUUCGGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCGGGAGGUCUCUCCCUCUCCAGAGGCAGGCAUGGAGAAGCAUGCUUUU .(((.(((.....(((((.....)))))(((((((......)))))))........))).)))......((((((((....)))))((....)))))(((((((......))))))).. ( -35.50) >canFam1.chr12/48213437-48213557 GGGAAUUGCCCAUUCUGACACCUUCAGAGUGAUGUGCUCACAUAUUGUCUUGAUAUCAAAUCCAGAUCAGCUGGGAGGUCUCAUCCUCCUCCUGAUGUGUGCACAGAGAAACACACAUUU (((.....)))(((((((.....)))))))..(((((.(((((...((((.(((.....))).))))(((..((((((......)))))).)))))))).)))))............... ( -39.00) >consensus GGGAAUUGCCAACUCUGACACCUUCAGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCGGGAGGUCUCACCCUCCCCA_GAGGCAGGCACAGAGAAGCACACAUUU .(((.(((...(((((((.....)))))))(((((......)))))..........))).))).........((((((......))))))...(((((((((........))))))))). (-30.15 = -28.65 + -1.50)