Structure #162008
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | - |
Position | 91,142,585 - 91,142,698 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 78.25 |
Columns | 120 |
Mean single MFE | -32.85 |
Consensus MFE | -20.98 |
Combinations/base pair | 41 / 29 = 1.41 |
SCI | 0.64 |
z-score | -2.5 |
RNA class probability | 0.989123 |
This structure is part of cluster 89785
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.25 Mean single sequence MFE: -32.85 Consensus MFE: -20.98 Energy contribution: -20.98 Covariance contribution: -0.00 Mean z-score: -2.50 Structure conservation index: 0.64 SVM decision value: 2.15 SVM RNA-class probability: 0.989123 Prediction: RNA ###################################################################### >hg17.chr6/91142698-91142585 AGAUUCUGGAGUCAUUUAAGUCCAAAGGGGAAAUUUGUGAGACUGGGGGAAGGGGAAGUAGUGAGAAAAUAGAAGCAACAAAAAUAUGCCUCCAGUGUUCUCACUGCUCAUUA ...(((..(..((((.....(((.....))).....))))..)..)))......((.((((((((((....((.(((.........))).)).....)))))))))))).... ( -29.00) >mm5.chr4/121739647-121739764 AAUCCUGAAGUCACACGAGUCCAAAGAGGGAAGUCGUGAGAGUCAGGAGAGGGGGCAGGAGGCCGUGAAAAAAUAGAAGUGACAGAAAUAGGCCUUCAGUGUUCUGGCUGCUCAUUA ..((((((..((.(((((.(((......)))..))))).)).))))))....((((((((((((..........................))))))(((....))).)))))).... ( -40.47) >rn3.chr5/124638497-124638616 AAUCUUGGAGUCACCCGAGUCCAAAGAGGGAAGUCGUGAGAGUCAGGAGAGGGGGGCAGGAGGUAGUGAAAAAAAUAGAAGCGACAGAAAUAGGACUUCAGUGUUCUGGCUGCUCAUUA ..((((.((.((.(.(((.(((......)))..))).).)).))..))))...((((((...((.((.............)).)).....((((((......)))))).)))))).... ( -27.72) >canFam1.chr12/52464093-52463980 AAAAUCUGGAGUCAUUUGAGUCCAAAGGGGAAACAUGUGAGAGAAGGGGGUGGGGGAGCGGUGAGAAAAUAGAAGCAACAAAAAUAUGCCUUCAGUGUUCUCACUGCUCAUUA ...(((((((.((....)).))).....(....).............))))....((((((((((((.((.((((((.........)).)))).)).)))))))))))).... ( -34.20) >consensus A_AUCCUGGAGUCACUCGAGUCCAAAGAGGAAAGUCGUGAGAGUCAGGAGAGGGG______AAGCAGUGAAAAAA_UAGAAGCAACAAAAAUAGGCCUUCAGUGUUCUCACUGCUCAUUA ...((((((..((((.....(((.....))).....))))...)))))).............(((((((((((.....(((((...........).))))....)))))))))))..... (-20.98 = -20.98 + -0.00)