Structure #165593
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | - |
Position | 148,404,360 - 148,404,476 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 83.33 |
Columns | 120 |
Mean single MFE | -28.65 |
Consensus MFE | -16.74 |
Combinations/base pair | 35 / 27 = 1.30 |
SCI | 0.58 |
z-score | -2.98 |
RNA class probability | 0.95201 |
This structure is part of cluster 91828
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.33 Mean single sequence MFE: -28.65 Consensus MFE: -16.74 Energy contribution: -16.98 Covariance contribution: 0.24 Mean z-score: -2.98 Structure conservation index: 0.58 SVM decision value: 1.40 SVM RNA-class probability: 0.952010 Prediction: RNA ###################################################################### >hg17.chr6/148404476-148404360 UCAGCUGAUAAAGAUUUAUUUGUCCUCAAGGCAUAAUAAUGGCCAAGAUUUGCCCAUGAUCAAUAACUCUUGAACCAAUAAAUCUUGGUACUGGCAACAAAAGCCAAUAUCUACUU ..........((((((((((.((..((((((.......((((.((.....)).))))..........)))))))).))))))))))((((.((((.......)))).))))..... ( -24.53) >mm5.chr10/121795121-121795237 UCAGCUGAUCAAGAUUUAUUUGUCCUGAAGGCAUCAUAAUGGCCAAGAUUUGCCCACAAUCGAUGACUCUCGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUU ............((((((((.(.(((((..(((((((..(((.((.....)).)))..)).)))).)..)))))).))))))))..(((((((((.......)))))))))..... ( -33.80) >rn3.chr1/264337131-264337247 UCAGCUGAUAAAGAUUUAUUUGUCCUGAAGGCAUCAUAAUGGCCAAGAUUUGACCACAAUCGAUGACUCUUGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUU ............((((((((.((((...((.((((((..(((.((.....)).)))..)).)))).))...)))).))))))))..(((((((((.......)))))))))..... ( -31.60) >canFam1.chr1/42018980-42018864 UCAGCUGAUAAAGAUUUAUUUGUCCUCAAGGUAUAAUAAUGGCCGAGAUUUGCCCAUGAUCAAUAACUUUUGAACCAAUAAAUCUUGAUAUCAGCAACAAAAGCCAAUAUCUACUU ...(((((((((((((((((.((.(..(((.(((....((((.(((...))).)))).....))).)))..).)).))))))))))..)))))))..................... ( -24.60) >galGal2.chr3/46486359-46486240 UCUUGGCUGGUAACAAGAUUUAUUAAUCUUUCAGAUAUAAUAAUGUCAUAGAUUUACUGUAGUCAAUAUCUCUUGUGCCAAUAAAUCUUGAUAUUGGCAACAGAAGUCAAUGCCUACUU ....(((.......((((((....))))))...(((((....)))))...(((((.((((.(((((((((..((((....)))).....))))))))).)))))))))...)))..... ( -28.70) >consensus UC__AGCUGAUAA__AGAUUUAUUUGUCCUCAAGGCAUAAUAAUGGCCAAGAUUUGCCCAUAAUCAAUAACUCUUGAGCCAAUAAAUCUUGGUAUUGGCAACAAAAGCCAAUAUCUACUU ................((((((((.((.(....(((.........)))..((((.......))))..........).)).))))))))..(((((((((.......)))))))))..... (-16.74 = -16.98 + 0.24)