Structure #167098
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr7 |
Strand | + |
Position | 12,673,969 - 12,674,073 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 74 |
Columns | 120 |
Mean single MFE | -35.9 |
Consensus MFE | -23.78 |
Combinations/base pair | 37 / 26 = 1.42 |
SCI | 0.66 |
z-score | -2.4 |
RNA class probability | 0.99671 |
This structure is part of cluster 92734
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 74.00 Mean single sequence MFE: -35.90 Consensus MFE: -23.78 Energy contribution: -23.14 Covariance contribution: -0.64 Mean z-score: -2.40 Structure conservation index: 0.66 SVM decision value: 2.74 SVM RNA-class probability: 0.996710 Prediction: RNA ###################################################################### >hg17.chr7/12673969-12674073 GUUUUAUCAGUUGCCAAGUCAUGGUCACCUGUGGCUCUGUCUUGGCAGCUAUGUGUUUAACAGGCCAGACAUUAUGUUCACAGGAAGGGCCUCCUGAAGCAUAA ........((((((((((.((.(((((....))))).)).)))))))))).(((((((...(((((...(....((....)).)...)))))....))))))). ( -38.70) >mm5.chr12/80130927-80130823 GUUUUAUCACUUGCCAAGUCGUGGCCACCUGUGGCUCUGCCUUGGCAGCUCUGCACUCAGCAGGCCAGACAUUAGGCUCACAGGAAAAGCCUCCUGAAGCGGAG ..........((((((((.((.(((((....))))).)).))))))))((((((........((((........))))..(((((......)))))..)))))) ( -40.80) >rn3.chr6/88576313-88576208 GUUUUAUCACUUGCCAAGUCAUGGCCACCUGUGGCUCUGCCUUGGCAGCUCUGCACUCAGCAGGCCAGACAAAAUGCUCACAAGGAAGAGCCUCCUGAAGCAGAG ..........((((((((.((.(((((....))))).)).))))))))((((((..((((.(((((.....................).)))).)))).)))))) ( -38.70) >canFam1.chr14/30211688-30211792 GUUUUAUCACUUGCCAAGUCAUGGCCACCUGUGGCUCUGUUUUGGCAGCUCUGUAUUUAACAGACCAGACAUUCUGUUCACAGGAAGGGCCUCCUGAAGCCUAA ((((.......(((((((.((.(((((....))))).)).)))))))(.(((((.....))))).))))).(((((....))))).((((........)))).. ( -33.20) >galGal2.chr2/26173403-26173522 GUUUGGUUGCUGGCCAAGUGUUCUUCACCUGUGGAUCAGACUUGGCAGCCCUUUUGUUACUCAGCCAGAUAUUUUGUUCACAGUAUUAUUUCCCUUUGAGAAACCAUCCCAAAAUGCAG (..(((((((((.((((((.(..((((....))))..).))))))))))..........(((((..(((((..(((....)))...)))))....))))).)))))..).......... ( -28.10) >consensus GUUUUAUCACUUGCCAAGUCAUGGCCACCUGUGGCUCUGCCUUGGCAGCUCUGUACUUAACAGGCCAGACAUUAUGUUCAC_AGGA_______________AGAGCCUCCUGAAGCAGAG ((((((.....(((((((.((.(((((....))))).)).)))))))(.(((((.....))))).)............................................)))))).... (-23.78 = -23.14 + -0.64)