Structure #170234
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr7 |
Strand | - |
Position | 61,948,610 - 61,948,729 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 87.68 |
Columns | 120 |
Mean single MFE | -47.85 |
Consensus MFE | -37.33 |
Combinations/base pair | 47 / 37 = 1.27 |
SCI | 0.78 |
z-score | -2.06 |
RNA class probability | 0.881409 |
This structure is part of cluster 94490
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.68 Mean single sequence MFE: -47.85 Consensus MFE: -37.33 Energy contribution: -36.57 Covariance contribution: -0.75 Mean z-score: -2.06 Structure conservation index: 0.78 SVM decision value: 0.92 SVM RNA-class probability: 0.881409 Prediction: RNA ###################################################################### >hg17.chr7/61948729-61948610 AUUAGCCUGUGAAAGGCCACUUGGCUAGCUGGUGGCCGAGAGAUGGCACCAGAGGCCAGGGCUGGGGUUAGUGAGUGGCCCUGUUUGCUUUACUUGCUGGGCAGAAAGAAGACUUUGGU ....((((.....))))..(((((((..((((((.(((.....))))))))).)))))))((..(((((..(.....((((.((..(.....)..)).)))).....)..)))))..)) ( -45.70) >mm5.chr14/55314800-55314681 AUUGGCCUGUGAAAGGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCUGGAGGCCAGGGUUGGGAUUAGUGAGUAGCCCUGUUUGCUCUCCUUGUUGGGAGGAAAGGGGACUUUGGU ..((((((.....))))))...(((((((.((((((((..((.(((((((((...)))))))))...))..)).))))))..)))))))(((((....))))).((((....))))... ( -52.90) >rn3.chr15/42612796-42612677 AUUGGCCUGUGAAAAGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCUGGAGGCCAGGGUUGGGAUUAGUGAGUAGCCCUGUUUGCUCUCCUUGUUGGGAGGAAAGGGGACUUUGGU ..((((.(.....).))))...(((((((.((((((((..((.(((((((((...)))))))))...))..)).))))))..)))))))(((((....))))).((((....))))... ( -46.40) >canFam1.chr25/29285786-29285667 AUUGGCCUGUGAAAGGCCACUUGGUGGGCCCGUUGCCGAGAGACGGCCCCAGAGGCCAGGGCUGGGAUUAGCGAGUGGCCCUGUUUGCUCUCCUUGCUGGAAGGAAAGAGGACUUUGGU ....(((.......(((((((((.(((.((((..((((.....)((((.....))))..))))))).))).)))))))))..(((..((.(((((.....))))).))..)))...))) ( -46.40) >consensus AUUGGCCUGUGAAAGGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCCAGAGGCCAGGGCUGGGAUUAGUGAGUAGCCC_UGUUUGCUCUCCUUGCUGGGAGGAAAGAGGACUUUGGU ..((((((.((...((((.((((((((.....))))))))....)))).)).))))))((((((...........))))))..((((.((.(((((.....))))).)).))))...... (-37.33 = -36.57 + -0.75)