Structure #171020
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr7 |
Strand | - |
Position | 72,754,119 - 72,754,238 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 74.09 |
Columns | 120 |
Mean single MFE | -51.15 |
Consensus MFE | -37.65 |
Combinations/base pair | 45 / 32 = 1.41 |
SCI | 0.74 |
z-score | -2 |
RNA class probability | 0.988917 |
This structure is part of cluster 94898
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 74.09 Mean single sequence MFE: -51.15 Consensus MFE: -37.65 Energy contribution: -36.15 Covariance contribution: -1.50 Mean z-score: -2.00 Structure conservation index: 0.74 SVM decision value: 2.14 SVM RNA-class probability: 0.988917 Prediction: RNA ###################################################################### >hg17.chr7/72754238-72754119 AUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAACCCCCGUGCAGGGCGCGGGCGCAGGCAACAGGCCAGGAGGUCCUGGGGCCUGAGGUCUCCAUUCCCACUGACAUCAGUGCAAGG ..(((((..........(((....)))((((((....(((((((...)))))))..(((((..((((((....)).))))..))))).)))).)).)))))((((....))))...... ( -56.30) >mm5.chr5/16902024-16902143 AUGGGAAGUAUAUAAGAGGCAUGAUCCGAGGCCAAGGCCUGUGCAGGGUUCGGGCAUGGGGCCAUGGGCCAGAAGGUCACAGAUCCCAGGGCUUCGGUUCCCACUGACAUUGAUGUAGG .((((((((.........)).....((((((((...(((((.((...)).))))).((((..(.((((((....)))).)))..)))).))))))))))))))(((.((....))))). ( -44.10) >rn3.chr12/22765333-22765215 AUGGGAAGUACAUAAGGGGCAUGGUCUGAGGCCAAGACCGUGCAGGGUAUGGGCGUGGGGUCAUGGACCACAAGGUCACCGAGCCCAAGGCUUCGGUCCCCACUGACAUCAAUGUAGG .(((...(..((((....(((((((((.......)))))))))....))))..)((((((.....((((....))))((((((((...))).))))))))))).....)))....... ( -48.30) >canFam1.chr6/69923951-69924070 AUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAAGCCCCGUGCAAGGCGCGGGCUCAGGCGACAAGCCAGAAAGUCCUGGGGCCUGAGGCCUCAGUUCCCAGUGACAUCAGUGCAAGG ............(....)((((((((((((((...)))))((((...)))).))))).(((.....))).....((((((((..((((....))))..))))).)))....)))).... ( -55.90) >consensus AUGGGAAGGACACAAGAGGCACGAGCCGAGGCCAAGCCCCGUGCAGGGCGCGGGCGCAGG_CCACAGGCCAGAAGGUCACGGAGCCCAAGGCCUCGGUUCCCACUGACAUCAAUGCA_GG .((((((..........(((....)))((((((....(((((((...)))))))..((((....((((((....)))).))...)))).))))))..))))))................. (-37.65 = -36.15 + -1.50)