Structure #172643

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	101,021,517 - 101,021,626
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	76.12
Columns	120
Mean single MFE	-36.28
Consensus MFE	-19.48
Combinations/base pair	43 / 33 = 1.30
SCI	0.54
z-score	-2.99
RNA class probability	0.999155

This structure is part of cluster 95813

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.12
 Mean single sequence MFE: -36.28
 Consensus MFE: -19.48
 Energy contribution: -20.12
 Covariance contribution:   0.64
 Mean z-score:  -2.99
 Structure conservation index:   0.54
 SVM decision value:   3.40
 SVM RNA-class probability: 0.999155
 Prediction: RNA

######################################################################

>hg17.chr7/101021517-101021626
UCUGCAGGGAAGAAAGUGUUAGACACGAGGGCAGAUGGAGUUUGCCUAACGUGUCUGUUCUCUUCUUUGCUGCCUUUUCAACUCUUCUUGGGAAUGCAGCAAAAUAGC
...((..((((((......((((((((.((((((((...))))))))..))))))))...))))))(((((((.((..(((......)))..)).)))))))....)) ( -40.80)
>canFam1.chr6/68165243-68165133
UCUGCAGGGAGAAAAGUGUUAGACUCGAGGGGCAGAUGGAGUUUGCCUAGCGUGUCUGUUCUCUUCUCUGCUGCCUUUUCAACUUUUCUUGGGAAUGCAGCAAAAUAGC
...((..((((((.((...(((((.((..((((((((...))))))))..)).)))))..)).))))))(((((.((..(((......)))..)).)))))......)) ( -42.50)
>mm5.chr5/180-72
UUCUGUGGGGAAAGAAAAGUGUUAGACAGAGAAGCCAGAGGCAGUUUGCCUAACGUGUCUUCUCUCUUCUCUCUGCCUUUUCAGUUCUUGUGAACGCAACAAAAUAAC
(((.(..((((..((((((.((.(((.(((((((.((.((((.....))))....)).)))))))....)))..))))))))..))))..)))).............. ( -28.80)
>rn3.chr12/71-179
UUCUGUGGGGAAAGAAAAGUGUUAGACAGAGAAGCCAGAGGCAGUUUGCCUAACAUGUCUUCUCUCUUCUCUCUGCCUUUUCAGUUCUUGUGAACGCAACAAAAUAAC
(((.(..((((..((((((.((.(((.(((((((.((.((((.....))))....)).)))))))....)))..))))))))..))))..)))).............. ( -29.90)
>galGal2.chr19/3617499-3617614
UUUGGCAAAAGAGAGAGUGAAGGAAAGUGAUAGACAUGAGGGGCAGAUGGAGUUUGCCUAAUGUGUCUGUUCUUUUCUUCGCUGCCUUUUCAAUUUAAGAAUGUAGCAAAAUAGC
....((....(((..((((((((((((.((((((((((..((((((((...))))))))..))))))))))))))))))))))..)))(((.......)))....))........ ( -39.40)
>consensus
UUCUGCAGGGAA________AGAAAAGUGUUAGACAGAGAGGGCAGAUGGAGUUUGCCUAACGUGUCUGUUCUCUUCUCUGCUGCCUUUUCAA___UUCUUGGGAAUGCAGCAAAAUAGC
....((((((((.............((...((((((....(((((((.....)))))))....))))))..)).))))))))(((.(((((((......))))))).))).......... (-19.48 = -20.12 +   0.64) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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