Structure #174122
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr7 |
Strand | + |
Position | 126,489,350 - 126,489,467 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 79.8 |
Columns | 120 |
Mean single MFE | -42.08 |
Consensus MFE | -29.19 |
Combinations/base pair | 46 / 33 = 1.39 |
SCI | 0.69 |
z-score | -1.71 |
RNA class probability | 0.703828 |
This structure is part of cluster 96693
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.80 Mean single sequence MFE: -42.08 Consensus MFE: -29.19 Energy contribution: -28.75 Covariance contribution: -0.44 Mean z-score: -1.71 Structure conservation index: 0.69 SVM decision value: 0.36 SVM RNA-class probability: 0.703827 Prediction: RNA ###################################################################### >hg17.chr7/126489350-126489467 AUAAGGGCAAUAAGGCUGGCUGUGGCUUUGGAAGCCUAAGGAGGCCGAGUGAGCCUCUUGGGGAAGAAAUGCCUAAUGAGCUGCCUUUCUCCUUUCCCUAUUGAUCAUUACCUGCAG ...((((....(((((.((((..(((.((.....(((.(((((((.......))))))).)))....)).))).....)))))))))........)))).................. ( -33.50) >mm5.chr6/27990188-27990307 AUGAGGACAACACAGCUGGCUGUGGCUUUGGAUGGUUUUGACAAGGCCCAGUAAGCUGCUAAGGAGAGAAGUGGCUAACGAGCUGCUUGUCUCGUUUUCCUAUUGAUCAUCACCUGCAG ...((((.(((.(((((.((((.(((((((...........))))))))))).))))).....((((.(((..(((....)))..))).))))))).)))).................. ( -47.40) >rn3.chr4/55165012-55165130 AUGAGGACAACAUAGCUGGCUGUGGCUUUGGACGGUUUGACAAGGCCCAGUAAGCUGCUAGGGAGAGAAGUGGCUAACGAGCUGCUUGUCUUCUCUUCCUAUUGAUCAUCACCUGCAG .(((((......(((((.((((.(((((((..........))))))))))).))))).((((((((((((.(((.........)))...))))))))))))..........))).)). ( -46.20) >canFam1.chr14/52018080-52017962 AUGAGGACAGCACAGUUGGUUGUGGCUUUGGAGGCCUGACAAGGCUAAGUGAGCUGCUCAGGGGAGAAGGGCCUAGCGAGCCUGCUUUUCUCCUUUCCUUAUGGAUCUUCACCUGCGG .((((((((((.((.((((((..((((.....))))......)))))).)).))))...((((((((((((((....).)))..)))))))))).(((....)))))))))....... ( -41.20) >consensus AUGAGGACAACACAGCUGGCUGUGGCUUUGGAAG__CCUGACAAGGCCCAGUAAGCUGCUAAGGAGAGAAGUGCCUAACGAG_CUGCUUGUCUCCUUUCCCUAUUGAUCAUCACCUGCAG ...(((......(((((.((((.(((((((...........))))))))))).))))).(((((((((.((.(((..........)))...)).)))))))))..........))).... (-29.19 = -28.75 + -0.44)