Structure #198309
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chrX |
Strand | + |
Position | 68,326,851 - 68,326,957 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 78.17 |
Columns | 120 |
Mean single MFE | -47.98 |
Consensus MFE | -33.58 |
Combinations/base pair | 45 / 33 = 1.36 |
SCI | 0.7 |
z-score | -1.81 |
RNA class probability | 0.840742 |
This structure is part of cluster 110219
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.17 Mean single sequence MFE: -47.98 Consensus MFE: -33.58 Energy contribution: -32.45 Covariance contribution: -1.13 Mean z-score: -1.81 Structure conservation index: 0.70 SVM decision value: 0.75 SVM RNA-class probability: 0.840742 Prediction: RNA ###################################################################### >hg17.chrX/68326851-68326957 UCUCUGGGGACGGAGGAUGGGGCUUCCACGGACUGCCUGGCUCCAGGCAACAGCCUGCAUCCUGAGGGAGGCCAGAGGAGGAGGAGCAAGGUGAUUGCAGCUGCUG (((((((...(..(((((((((((((....)).((((((....))))))..))))).))))))..).....)))))))((.((..((((.....))))..)).)). ( -43.40) >mm5.chrX/91015939-91016054 UCUCUGGGGACAGAGAAUGGGGUUGCCAUGGACUGCCUGGCUCCAGGCUUCAGCCUGGGUCUUGAGGGAGGCCAGGAGAGGCGGAGCAAGGUGCCUGCUGCUGCUGCAGUUGCUG ((((((....))))))((((.....)))).((((((((((((((((((....)))))).(((....)))))))))....(((((((((.(....))))).))))))))))).... ( -54.80) >rn3.chrX/87692731-87692842 UCUCUGGGGACAGAGAAUGGGGCUGUCAUGGACUGCCUGGCUCCAGGCUGCAGCCUGGGUCUUGAGGGAGGCCAGGAGAGGCGGAGCAAGGUGCCUGCCUGCCUGCUGCUG ((((((....))))))...((((.........((.(((((((((((((....)))))).(((....))))))))))))((((((.((.....))))))))))))....... ( -54.80) >canFam1.chrX/56543252-56543358 UUUCUAGGGAGGGAGGAUGGGGCUUCCAUGGCUUUCCUGGUUCCAGGAAGCAGCUUGGGUCCUGAGGGAAACCAGGAGAUAAGAAGCAAGGUGCCUGUGGCUGCUG (((((......)))))....(((..(((((((.((((((....))))))((..((((..((((..((....))))))..))))..)).....))).))))..))). ( -38.90) >consensus UCUCUGGGGACAGAGAAUGGGGCUGCCAUGGACUGCCUGGCUCCAGGCAGCAGCCUGGGUCCUGAGGGAGGCCAGGAGAGGAGGAGCAAGGUGCCUG_____CUGCUGCUG_________ ((((((....))))))...((((..((.((..((((((((((((((((....)))))).(((....)))))))))).....)))..)).)).))))........................ (-33.58 = -32.45 + -1.13)