Structure #198313

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	68,360,418 - 68,360,538
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	80.08
Columns	120
Mean single MFE	-38.16
Consensus MFE	-24.77
Combinations/base pair	42 / 30 = 1.40
SCI	0.65
z-score	-2.23
RNA class probability	0.937577

This structure is part of cluster 110221

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.08
 Mean single sequence MFE: -38.16
 Consensus MFE: -24.77
 Energy contribution: -23.90
 Covariance contribution:  -0.87
 Mean z-score:  -2.23
 Structure conservation index:   0.65
 SVM decision value:   1.26
 SVM RNA-class probability: 0.937577
 Prediction: RNA

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>hg17.chrX/68360538-68360418
UAUCCCUUCUGGAAGGCUGUUCUGCACCCCUUCCCCCUUUCUCCUCUCUUUCAAGGGGUGGGAGCAGCCUCCAUUUGGCUCCACUGUGGACUAUCCAUACUCUGUGGGGAAAAAGUUAGU
....((...((((.(((((((((.((((((((....................)))))))))))))))))))))...))(((((((((((.....)))))....))))))........... ( -47.05)
>canFam1.chrX/56562242-56562122
UAUCCCUUCUGGAAGGCUGUUCCACUCCCCUUCCCCCUUUCCCCUCUCCUCCCACAUGCGGGAGGGGCCUCUGUUUGGCUUAACUGUGGACCAUCCAUACUCUGUGGAGAAAAUGUCUGU
..(((.....)))((((((.(((((......................((((((......))))))((((.......)))).....))))).))(((((.....)))))......)))).. ( -34.00)
>mm5.chrX/91028381-91028268
UAUCCUUUCUGGAAGGCUGCUCUACUCCCCUCUCCCCUCUCCUCUUAGGGGUGGGAGAGGCCUCCAUUUGGCUCAACUCCGGACUAUCCGUACUCUGUGGGGAAAAUGUUUGG
...((....((((.((((......(((((....(((((........))))).))))).))))))))...)).......((((((..(((.(((...))).)))....)))))) ( -36.60)
>rn3.chrX/87708175-87708057
UAUCCCUUCUGGAAGGCUGCUCGACUCCCCUCUCCCCUCUCUUCUCUUCUUAGGAGCAGGAGGGGCCUCCAUUUGGCUCAACUCCGGACUAUCCACACUCUGUGGGGAAAAUGUUAGG
..((((.((((((.....((.(((.........((((((.((.((((.....)))).)))))))).......))))).....)))))).....(((.....))))))).......... ( -34.99)
>consensus
UAUCCCUUCUGGAAGGCUGCUCUACUCCCCUCCCCCCUCUCCCCUCUCCUU__AGGGGCGGGAGGGGCCUCCAUUUGGCUCAACUCCGGACUAUCCAUACUCUGUGGGGAAAAUGUUAGG
....((...((((.((((.((((...(((((......................)))))..)))).))))))))...)).......((((((..(((((.....)))))......)))))) (-24.77 = -23.90 +  -0.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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