Research Projects

RNA related

  • Three Dimensional Structures of Small RNA Molecules
  • Inverse Folding of Biopolymers
  • Identification of Conserved Secondary Structures in RNA Virus Genomes
  • Scanning RNA Virus Genomes for Conserved RNA Secondary Structures
  • Design of RNA Domains, Substrates or Inhibitors of tRNA-Recognising Proteins
  • Computational RNomics: The Quest for RNA Genes

    • Proteins

  • Mapping Neutral Networks in Protein Space
  • Voyages in Protein Space
  • Lattice Heteropolymers

    • Evolutionary Dynamics

  • Structural Perturbations of Autocatalytic Networks
  • Evolution at Molecular Resolution

    • Functional Organization

  • The AlChemy Project
  • Functional Organization in Molecular Systems

    • Mathematical Foundations

  • Mathematical Foundations of Fitness Landscapes
  • Eigenvectors of Graph Laplacians
  • Graph Theoretic Properties of Biopolymers
  • Generalized Topology in Biology and Chemistry
  • Short Cycles in Graphs
    • See also the TBI Software Page
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