Andreas R. Gruber
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Biozentrum University of Basel Klingelbergstrasse 50-70 4056 Basel Switzerland E: andreas.gruber [at] unibas.ch agruber [at] tbi.univie.ac.at W: http://argruber.com T: +41 61 267 18 86 |
Short Bio
I am currently a Postdoctoral Associate in Mihaela Zavolan's group at the Univserity of Basel, Switzerland. My PhD was advised by Ivo Hofacker at the University of Vienna, Austria. Before that I earned a MSc degree in Molecular Biology from the University of Vienna, and a BA degree in Bioinformatics from the Technical University of Vienna.
You can find my full CV as a PDF file here.
Picture gallery of recent trips: here.
Publications (see also Google Scholar and Pubmed)
(* denotes co-first author)
2011
2010
2009
2008
2007
Presentations
& Posters
Tristetraprolin-driven regulatory circuit controls
quality and timing of mRNA decay in inflammation.
Kratochvill F, Machacek C, Vogl C, Ebner F, Sedlyarov V, Gruber AR, Hartweger H, Vielnascher R, Karaghiosoff M, Rülicke T, Müller M, Hofacker I, Lang R, Kovarik P.
Mol Syst Biol. 2011, 7:560
@nature.com
Animal snoRNAs and scaRNAs with exceptional structures.
Marz M*, Gruber AR*, Höner Zu Siederdissen C*, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF.
RNA Biol. 2011, 8(6):938-46
@landesbioscience.com
AREsite: a database for the comprehensive investigation of AU rich elements.
Gruber AR, Fallmann J, Kratochvill F, Kovarik P, Hofacker IL.
Nucleic Acids Res. 2011, 39(Database issue):D66-9
@oxfordjournals.org
Kratochvill F, Machacek C, Vogl C, Ebner F, Sedlyarov V, Gruber AR, Hartweger H, Vielnascher R, Karaghiosoff M, Rülicke T, Müller M, Hofacker I, Lang R, Kovarik P.
Mol Syst Biol. 2011, 7:560
@nature.com
Animal snoRNAs and scaRNAs with exceptional structures.
Marz M*, Gruber AR*, Höner Zu Siederdissen C*, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF.
RNA Biol. 2011, 8(6):938-46
@landesbioscience.com
AREsite: a database for the comprehensive investigation of AU rich elements.
Gruber AR, Fallmann J, Kratochvill F, Kovarik P, Hofacker IL.
Nucleic Acids Res. 2011, 39(Database issue):D66-9
@oxfordjournals.org
2010
RNALfoldz: efficient prediction of thermodynamically stable, local secondary structures.
Gruber AR, Bernhart SH, Zhou Y, Hofacker IL.
German Conference on Bioinformatics 2010, 12-21
@univie.ac.at
Nematode sbRNAs: homologs of vertebrate Y RNAs.
Boria I*, Gruber AR*, Tanzer A*, Bernhart SH, Lorenz R, Mueller MM, Hofacker IL, Stadler PF.
J Mol Evol. 2010, 70(4):346-58.
@springerlink.com
RNAz 2.0: Improved noncoding RNA detection.
Gruber AR, Findeiss S, Washietl S, Hofacker IL, Stadler PF.
Pac Symp Biocomput. 2010, 15:69-79
@stanford.edu
Gruber AR, Bernhart SH, Zhou Y, Hofacker IL.
German Conference on Bioinformatics 2010, 12-21
@univie.ac.at
Nematode sbRNAs: homologs of vertebrate Y RNAs.
Boria I*, Gruber AR*, Tanzer A*, Bernhart SH, Lorenz R, Mueller MM, Hofacker IL, Stadler PF.
J Mol Evol. 2010, 70(4):346-58.
@springerlink.com
RNAz 2.0: Improved noncoding RNA detection.
Gruber AR, Findeiss S, Washietl S, Hofacker IL, Stadler PF.
Pac Symp Biocomput. 2010, 15:69-79
@stanford.edu
2009
Non-Splitting Tridiagonalization of Complex Symmetric Matrices.
Gansterer WN, Gruber AR, and Pacher C.
ICCS (1) 2009: 481-490
@springerlink.com
Gansterer WN, Gruber AR, and Pacher C.
ICCS (1) 2009: 481-490
@springerlink.com
2008
RNAalifold: improved consensus structure prediction for RNA alignments.
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF.
BMC Bioinformatics. 2008, 9:474.
@biomedcentral.com
Arthropod 7SK RNA.
Gruber AR, Kilgus C, Mosig A, Hofacker IL, Hennig W, Stadler PF.
Mol Biol Evol. 2008, 25(9):1923-30
@oxfordjournals.org
The Vienna RNA Websuite.
Gruber AR, Lorenz R, Bernhart S, Neuböck R, Hofacker IL.
Nucleic Acids Res. 2008, 36(Web Server issue):W70-4
@oxfordjournals.org
Strategies for measuring evolutionary conservation of RNA secondary structures.
Gruber AR, Bernhart S, Hofacker IL, Washietl S.
BMC Bioinformatics 2008, 9:122
@biomedcentral.com
Invertebrate 7SK snRNAs.
Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ.
J Mol Evol. 2008, 66(2):107-15.
@springerlink.com
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF.
BMC Bioinformatics. 2008, 9:474.
@biomedcentral.com
Arthropod 7SK RNA.
Gruber AR, Kilgus C, Mosig A, Hofacker IL, Hennig W, Stadler PF.
Mol Biol Evol. 2008, 25(9):1923-30
@oxfordjournals.org
The Vienna RNA Websuite.
Gruber AR, Lorenz R, Bernhart S, Neuböck R, Hofacker IL.
Nucleic Acids Res. 2008, 36(Web Server issue):W70-4
@oxfordjournals.org
Strategies for measuring evolutionary conservation of RNA secondary structures.
Gruber AR, Bernhart S, Hofacker IL, Washietl S.
BMC Bioinformatics 2008, 9:122
@biomedcentral.com
Invertebrate 7SK snRNAs.
Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ.
J Mol Evol. 2008, 66(2):107-15.
@springerlink.com
2007
The RNAz web server: prediction of thermodynamically
stable and evolutionarily conserved RNA structures.
Gruber AR, Neuböck R, Hofacker IL, Washietl S.
Nucleic Acids Res. 2007, 35(Web Server issue):W335-8
@oxfordjournals.org
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF.
Genome Res. 2007, 17(6):852-64.
@cshlp.org
Gruber AR, Neuböck R, Hofacker IL, Washietl S.
Nucleic Acids Res. 2007, 35(Web Server issue):W335-8
@oxfordjournals.org
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF.
Genome Res. 2007, 17(6):852-64.
@cshlp.org
+ Keystone Symposium Protein-RNA Interactions in Biology and Disease 2012, Santa Fe, USA. [presentation|poster]
+ Biozentrum Symposium 2012, Basel, Switzerland. [presentation|poster]
+ German Conference on Bioinformatics 2010, Braunschweig, Germany. [presentation]
+ Pacific Symposium on Biocomputing (PSB) 2010, Hawaii, USA. [presentation|poster]
+ German Conference on Bioinformatics 2009, Halle, Germany. [poster]
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