Perl-Scripts for Analysis of Flowreactor runs

Tools for analysis of relaySeries-based reactors

achievement.pl

extracts the birth, death and parentship of a certain phenotype from a flowreactor history file and sends it output to STDOUT.

achievement.pl -ldp -s [phenotypeNumber] -h [historyFile]

 -l                birth
 -d                death
 -p                parentship
 -s [shapeNr]      shapenr 
 -h [historyfile]  historyfile

relay.pl

prints the relay-series (relay.dat), the trajectory (traj.dat), and the live periods (live.dat) of the given phenotype from a flowreactor history file.

relay.pl -p [phenotypeNumber] -h [historyFile] -f [phenoFile]

 -p phenotypeNo    default: 1
 -h history        default: tst.history
 -f phenofile      default: phenotypes

flow_analysis.pl

produces a list of "major player" in the flowreactor from traj.dat (see relay.pl), the history file, the sequences file, and a monitor file (reads time and mastershape id) and prints phenotypeNumber, times in relay-series, master time, phenotype innovations, and deaths of every important phenotype

flow_analysis.pl -m [monitorFile] -t [trajectoryFile] -h [historyFile] -s [sequencesFile]

 -m monitorFile       default: tst.mon
 -t trajectoryFile    default: traj.dat 
 -h historyFile       default: tst.history
 -s sequencesFile     default: sequences

Perl-Scripts for Analysis of Flowreactor runs

Tools for analysis of relaySeries-based reactors

achievement.pl

relay.pl

flow_analysis.pl

Tools for analysis of lineage-based reactors

linachieve.pl

lineage.pl

linextract.pl

linwritegml.pl

linpheotype.pl

lindistance.pl

linreduce.pl

linpopul.pl